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Phylogenetic profiling in eukaryotes: The effect of species, orthologous group, and interactome selection on protein interaction prediction.
PLoS One. 2022 Apr 14;17(4):e0251833. doi: 10.1371/journal.pone.0251833. eCollection 2022.
PLoS One. 2022.
PMID: 35421089
Free PMC article.
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.
Deutekom ES, Vosseberg J, van Dam TJP, Snel B.
Deutekom ES, et al.
PLoS Comput Biol. 2019 Aug 28;15(8):e1007301. doi: 10.1371/journal.pcbi.1007301. eCollection 2019 Aug.
PLoS Comput Biol. 2019.
PMID: 31461468
Free PMC article.
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Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
Deutekom ES, Snel B, van Dam TJP.
Deutekom ES, et al.
Brief Bioinform. 2021 May 20;22(3):bbaa206. doi: 10.1093/bib/bbaa206.
Brief Bioinform. 2021.
PMID: 32935832
Free PMC article.
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Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral.
Liew YJ, Zoccola D, Li Y, Tambutté E, Venn AA, Michell CT, Cui G, Deutekom ES, Kaandorp JA, Voolstra CR, Forêt S, Allemand D, Tambutté S, Aranda M.
Liew YJ, et al. Among authors: deutekom es.
Sci Adv. 2018 Jun 6;4(6):eaar8028. doi: 10.1126/sciadv.aar8028. eCollection 2018 Jun.
Sci Adv. 2018.
PMID: 29881778
Free PMC article.
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Testing hypotheses on the calcification in scleractinian corals using a spatio-temporal model that shows a high degree of robustness.
Willard HF, Deutekom ES, Allemand D, Tambutté S, Kaandorp JA.
Willard HF, et al. Among authors: deutekom es.
J Theor Biol. 2023 Mar 21;561:111382. doi: 10.1016/j.jtbi.2022.111382. Epub 2023 Jan 4.
J Theor Biol. 2023.
PMID: 36610694
Free article.
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