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Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: deshpande d. Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z. Nat Methods. 2022. PMID: 35396471 Free PMC article.
Technology dictates algorithms: recent developments in read alignment.
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. Alser M, et al. Among authors: deshpande d. Genome Biol. 2021 Aug 26;22(1):249. doi: 10.1186/s13059-021-02443-7. Genome Biol. 2021. PMID: 34446078 Free PMC article. Review.
RNA-seq data science: From raw data to effective interpretation.
Deshpande D, Chhugani K, Chang Y, Karlsberg A, Loeffler C, Zhang J, Muszyńska A, Munteanu V, Yang H, Rotman J, Tao L, Balliu B, Tseng E, Eskin E, Zhao F, Mohammadi P, P Łabaj P, Mangul S. Deshpande D, et al. Front Genet. 2023 Mar 13;14:997383. doi: 10.3389/fgene.2023.997383. eCollection 2023. Front Genet. 2023. PMID: 36999049 Free PMC article. Review.
Whole blood transcriptomics identifies subclasses of pediatric septic shock.
Yang JO, Zinter MS, Pellegrini M, Wong MY, Gala K, Markovic D, Nadel B, Peng K, Do N, Mangul S, Nadkarni VM, Karlsberg A, Deshpande D, Butte MJ, Asaro L, Agus M, Sapru A; Study Site Investigators for CAF-PINT. Yang JO, et al. Among authors: deshpande d. Crit Care. 2023 Dec 8;27(1):486. doi: 10.1186/s13054-023-04689-y. Crit Care. 2023. PMID: 38066613 Free PMC article.
Antibacterial Effect of Two Novel Sealants: A Laboratory-Based Study.
Deshpande DD, Maniar D, Bhargava A, Joshi PT, Kadur Sundar Raj R, Dubey A. Deshpande DD, et al. J Pharm Bioallied Sci. 2024 Feb;16(Suppl 1):S206-S208. doi: 10.4103/jpbs.jpbs_459_23. Epub 2024 Feb 29. J Pharm Bioallied Sci. 2024. PMID: 38595342 Free PMC article.
COVID-19 Vaccination in Patients with Inborn Errors of Immunity Reduces Hospitalization and Critical Care Needs Related to COVID-19: a USIDNET Report.
McDonnell J, Cousins K, Younger MEM, Lane A, Abolhassani H, Abraham RS, Al-Tamemi S, Aldave-Becerra JC, Al-Faris EH, Alfaro-Murillo A, AlKhater SA, Alsaati N, Doss AMA, Anderson M, Angarola E, Ariue B, Arnold DE, Assa'ad AH, Aytekin C, Bank M, Bergerson JRE, Bleesing J, Boesing J, Bouso C, Brodszki N, Cabanillas D, Cady C, Callahan MA, Caorsi R, Carbone J, Carrabba M, Castagnoli R, Catanzaro JR, Chan S, Chandra S, Chapdelaine H, Chavoshzadeh Z, Chong HJ, Connors L, Consonni F, Correa-Jimenez O, Cunningham-Rundles C, D'Astous-Gauthier K, Delmonte OM, Demirdag YY, Deshpande DR, Diaz-Cabrera NM, Dimitriades VR, El-Owaidy R, ElGhazali G, Al-Hammadi S, Fabio G, Faure AS, Feng J, Fernandez JM, Fill L, Franco GR, Frenck RW, Fuleihan RL, Giardino G, Galant-Swafford J, Gambineri E, Garabedian EK, Geerlinks AV, Goudouris E, Grecco O, Pan-Hammarström Q, Khani HHK, Hammarström L, Hartog NL, Heimall J, Hernandez-Molina G, Horner CC, Hostoffer RW, Hristova N, Hsiao KC, Ivankovich-Escoto G, Jaber F, Jalil M, Jamee M, Jean T, Jeong S, Jhaveri D, Jordan MB, Joshi AY, Kalkat A, Kanarek HJ, Kellner ES, Khojah A, Khoury R, Kokron CM, Kumar A, Lecerf K, Lehman HK, Leiding JW, Lesmana H, Lim XR,… See abstract for full author list ➔ McDonnell J, et al. Among authors: deshpande dr. J Clin Immunol. 2024 Apr 5;44(4):86. doi: 10.1007/s10875-023-01613-5. J Clin Immunol. 2024. PMID: 38578389 Free PMC article.
401 results