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Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T. Djebali S, et al. Among authors: derrien t. Methods Mol Biol. 2017;1468:201-19. doi: 10.1007/978-1-4939-4035-6_14. Methods Mol Biol. 2017. PMID: 27662878
Long noncoding RNA repertoire in chicken liver and adipose tissue.
Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S. Muret K, et al. Among authors: derrien t. Genet Sel Evol. 2017 Jan 10;49(1):6. doi: 10.1186/s12711-016-0275-0. Genet Sel Evol. 2017. PMID: 28073357 Free PMC article.
Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas.
Hitte C, Le Béguec C, Cadieu E, Wucher V, Primot A, Prouteau A, Botherel N, Hédan B, Lindblad-Toh K, André C, Derrien T. Hitte C, et al. Among authors: derrien t. Genes (Basel). 2019 Jun 23;10(6):477. doi: 10.3390/genes10060477. Genes (Basel). 2019. PMID: 31234577 Free PMC article.
Multi-species annotation of transcriptome and chromatin structure in domesticated animals.
Foissac S, Djebali S, Munyard K, Vialaneix N, Rau A, Muret K, Esquerré D, Zytnicki M, Derrien T, Bardou P, Blanc F, Cabau C, Crisci E, Dhorne-Pollet S, Drouet F, Faraut T, Gonzalez I, Goubil A, Lacroix-Lamandé S, Laurent F, Marthey S, Marti-Marimon M, Momal-Leisenring R, Mompart F, Quéré P, Robelin D, Cristobal MS, Tosser-Klopp G, Vincent-Naulleau S, Fabre S, Pinard-Van der Laan MH, Klopp C, Tixier-Boichard M, Acloque H, Lagarrigue S, Giuffra E. Foissac S, et al. Among authors: derrien t. BMC Biol. 2019 Dec 30;17(1):108. doi: 10.1186/s12915-019-0726-5. BMC Biol. 2019. PMID: 31884969 Free PMC article.
Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.
Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM. Cormier A, et al. Among authors: derrien t. New Phytol. 2017 Apr;214(1):219-232. doi: 10.1111/nph.14321. Epub 2016 Nov 21. New Phytol. 2017. PMID: 27870061 Free article.
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.
Wucher V, Legeai F, Hédan B, Rizk G, Lagoutte L, Leeb T, Jagannathan V, Cadieu E, David A, Lohi H, Cirera S, Fredholm M, Botherel N, Leegwater PAJ, Le Béguec C, Fieten H, Johnson J, Alföldi J, André C, Lindblad-Toh K, Hitte C, Derrien T. Wucher V, et al. Among authors: derrien t. Nucleic Acids Res. 2017 May 5;45(8):e57. doi: 10.1093/nar/gkw1306. Nucleic Acids Res. 2017. PMID: 28053114 Free PMC article.
Characterisation and functional predictions of canine long non-coding RNAs.
Le Béguec C, Wucher V, Lagoutte L, Cadieu E, Botherel N, Hédan B, De Brito C, Guillory AS, André C, Derrien T, Hitte C. Le Béguec C, et al. Among authors: derrien t. Sci Rep. 2018 Sep 7;8(1):13444. doi: 10.1038/s41598-018-31770-2. Sci Rep. 2018. PMID: 30194329 Free PMC article.
63 results