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The neutralization effect of montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies.
Durdagi S, Avsar T, Orhan MD, Serhatli M, Balcioglu BK, Ozturk HU, Kayabolen A, Cetin Y, Aydinlik S, Bagci-Onder T, Tekin S, Demirci H, Guzel M, Akdemir A, Calis S, Oktay L, Tolu I, Butun YE, Erdemoglu E, Olkan A, Tokay N, Işık Ş, Ozcan A, Acar E, Buyukkilic S, Yumak Y. Durdagi S, et al. Among authors: demirci h. Mol Ther. 2022 Feb 2;30(2):963-974. doi: 10.1016/j.ymthe.2021.10.014. Epub 2021 Oct 19. Mol Ther. 2022. PMID: 34678509 Free PMC article.
Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing.
Durdagi S, Dağ Ç, Dogan B, Yigin M, Avsar T, Buyukdag C, Erol I, Ertem FB, Calis S, Yildirim G, Orhan MD, Guven O, Aksoydan B, Destan E, Sahin K, Besler SO, Oktay L, Shafiei A, Tolu I, Ayan E, Yuksel B, Peksen AB, Gocenler O, Yucel AD, Can O, Ozabrahamyan S, Olkan A, Erdemoglu E, Aksit F, Tanisali G, Yefanov OM, Barty A, Tolstikova A, Ketawala GK, Botha S, Dao EH, Hayes B, Liang M, Seaberg MH, Hunter MS, Batyuk A, Mariani V, Su Z, Poitevin F, Yoon CH, Kupitz C, Sierra RG, Snell EH, DeMirci H. Durdagi S, et al. Among authors: demirci h. Structure. 2021 Dec 2;29(12):1382-1396.e6. doi: 10.1016/j.str.2021.07.007. Epub 2021 Aug 16. Structure. 2021. PMID: 34403647 Free PMC article.
Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight".
Atalay N, Akcan EK, Gül M, Ayan E, Destan E, Ertem FB, Tokay N, Çakilkaya B, Nergiz Z, Karakadioğlu G, Kepceoğlu A, Yapici İ, Tosun B, Baldir N, Yildirim G, Johnson JA, Güven Ö, Shafiei A, Arslan NE, Yilmaz M, Kulakman C, Paydos SS, Çinal ZS, Şabanoğlu K, Pazarçeviren A, Yilmaz A, Canbay B, Aşci B, Kartal E, Tavli S, Çaliseki M, Göç G, Mermer A, Yeşilay G, Altuntaş S, Tateishi H, Otsuka M, Fujita M, Tekin Ş, Çiftçi H, Durdaği S, Dinler Doğanay G, Karaca E, Kaplan Türköz B, Kabasakal BV, Kati A, Demirci H. Atalay N, et al. Among authors: demirci h. Turk J Biol. 2023 Jan 11;47(1):1-13. doi: 10.55730/1300-0152.2637. eCollection 2023. Turk J Biol. 2023. PMID: 37529114 Free PMC article.
Protocol for structure determination of SARS-CoV-2 main protease at near-physiological-temperature by serial femtosecond crystallography.
Ertem FB, Guven O, Buyukdag C, Gocenler O, Ayan E, Yuksel B, Gul M, Usta G, Cakılkaya B, Johnson JA, Dao EH, Su Z, Poitevin F, Yoon CH, Kupitz C, Hayes B, Liang M, Hunter MS, Batyuk A, Sierra RG, Ketawala G, Botha S, Dağ Ç, DeMirci H. Ertem FB, et al. Among authors: demirci h. STAR Protoc. 2022 Jan 24;3(1):101158. doi: 10.1016/j.xpro.2022.101158. eCollection 2022 Mar 18. STAR Protoc. 2022. PMID: 35194584 Free PMC article.
Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser.
Demirci H, Sierra RG, Laksmono H, Shoeman RL, Botha S, Barends TR, Nass K, Schlichting I, Doak RB, Gati C, Williams GJ, Boutet S, Messerschmidt M, Jogl G, Dahlberg AE, Gregory ST, Bogan MJ. Demirci H, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Sep;69(Pt 9):1066-9. doi: 10.1107/S174430911302099X. Epub 2013 Aug 19. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23989164 Free PMC article.
Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II.
Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H. Sierra RG, et al. Among authors: demirci h. Nat Methods. 2016 Jan;13(1):59-62. doi: 10.1038/nmeth.3667. Epub 2015 Nov 30. Nat Methods. 2016. PMID: 26619013 Free PMC article.
Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser.
Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundström U, Koglin JE, Mgbam P, Rao Y, Zhang L, Wakatsuki S, Holton JM, Boutet S. Hunter MS, et al. Among authors: demirci h. Nat Commun. 2016 Nov 4;7:13388. doi: 10.1038/ncomms13388. Nat Commun. 2016. PMID: 27811937 Free PMC article.
413 results