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Computational methods for RNA modification detection from nanopore direct RNA sequencing data.
RNA Biol. 2021 Oct 15;18(sup1):31-40. doi: 10.1080/15476286.2021.1978215. Epub 2021 Sep 24.
RNA Biol. 2021.
PMID: 34559589
Free PMC article.
Review.
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
Cozzuto L, Liu H, Pryszcz LP, Pulido TH, Delgado-Tejedor A, Ponomarenko J, Novoa EM.
Cozzuto L, et al. Among authors: delgado tejedor a.
Front Genet. 2020 Mar 17;11:211. doi: 10.3389/fgene.2020.00211. eCollection 2020.
Front Genet. 2020.
PMID: 32256520
Free PMC article.
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Evaluating the usefulness of next-generation sequencing for herb authentication.
Delgado-Tejedor A, Leekitcharoenphon P, Aarestrup FM, Otani S.
Delgado-Tejedor A, et al.
Food Chem (Oxf). 2021 Oct 20;3:100044. doi: 10.1016/j.fochms.2021.100044. eCollection 2021 Dec 30.
Food Chem (Oxf). 2021.
PMID: 35415645
Free PMC article.
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N6-methyladenosine modification is not a general trait of viral RNA genomes.
Baquero-Pérez B, Yonchev ID, Delgado-Tejedor A, Medina R, Puig-Torrents M, Sudbery I, Begik O, Wilson SA, Novoa EM, Díez J.
Baquero-Pérez B, et al. Among authors: delgado tejedor a.
Nat Commun. 2024 Mar 11;15(1):1964. doi: 10.1038/s41467-024-46278-9.
Nat Commun. 2024.
PMID: 38467633
Free PMC article.
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Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores.
Cozzuto L, Delgado-Tejedor A, Hermoso Pulido T, Novoa EM, Ponomarenko J.
Cozzuto L, et al. Among authors: delgado tejedor a.
Methods Mol Biol. 2023;2624:185-205. doi: 10.1007/978-1-0716-2962-8_13.
Methods Mol Biol. 2023.
PMID: 36723817
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Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.
Begik O, Diensthuber G, Liu H, Delgado-Tejedor A, Kontur C, Niazi AM, Valen E, Giraldez AJ, Beaudoin JD, Mattick JS, Novoa EM.
Begik O, et al. Among authors: delgado tejedor a.
Nat Methods. 2023 Jan;20(1):75-85. doi: 10.1038/s41592-022-01714-w. Epub 2022 Dec 19.
Nat Methods. 2023.
PMID: 36536091
Free PMC article.
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