Dekker C - Search Results

1

Condensin-driven loop extrusion on supercoiled DNA.

Kim E, Gonzalez AM, Pradhan B, van der Torre J, Dekker C. Kim E, et al. Among authors: dekker c. Nat Struct Mol Biol. 2022 Jul;29(7):719-727. doi: 10.1038/s41594-022-00802-x. Epub 2022 Jul 14. Nat Struct Mol Biol. 2022. PMID: 35835864

2

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

Seidel R, van Noort J, van der Scheer C, Bloom JG, Dekker NH, Dutta CF, Blundell A, Robinson T, Firman K, Dekker C. Seidel R, et al. Among authors: dekker c, dekker nh. Nat Struct Mol Biol. 2004 Sep;11(9):838-43. doi: 10.1038/nsmb816. Epub 2004 Aug 8. Nat Struct Mol Biol. 2004. PMID: 15300241

3

Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Koster DA, Croquette V, Dekker C, Shuman S, Dekker NH. Koster DA, et al. Among authors: dekker c, dekker nh. Nature. 2005 Mar 31;434(7033):671-4. doi: 10.1038/nature03395. Nature. 2005. PMID: 15800630

4

Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA.

Moreno-Herrero F, de Jager M, Dekker NH, Kanaar R, Wyman C, Dekker C. Moreno-Herrero F, et al. Among authors: dekker c, dekker nh. Nature. 2005 Sep 15;437(7057):440-3. doi: 10.1038/nature03927. Nature. 2005. PMID: 16163361

5

Dynamics of DNA supercoils.

van Loenhout MT, de Grunt MV, Dekker C. van Loenhout MT, et al. Among authors: dekker c. Science. 2012 Oct 5;338(6103):94-7. doi: 10.1126/science.1225810. Epub 2012 Sep 13. Science. 2012. PMID: 22983709

6

Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence.

Vlijm R, Mashaghi A, Bernard S, Modesti M, Dekker C. Vlijm R, et al. Among authors: dekker c. Nanoscale. 2015 Feb 21;7(7):3205-16. doi: 10.1039/c4nr04332d. Nanoscale. 2015. PMID: 25615283

7

Copper-free click chemistry for attachment of biomolecules in magnetic tweezers.

Eeftens JM, van der Torre J, Burnham DR, Dekker C. Eeftens JM, et al. Among authors: dekker c. BMC Biophys. 2015 Sep 25;8:9. doi: 10.1186/s13628-015-0023-9. eCollection 2015. BMC Biophys. 2015. PMID: 26413268 Free PMC article.

8

Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting.

Vlijm R, V D Torre J, Dekker C. Vlijm R, et al. Among authors: dekker c. PLoS One. 2015 Oct 29;10(10):e0141576. doi: 10.1371/journal.pone.0141576. eCollection 2015. PLoS One. 2015. PMID: 26513573 Free PMC article.

9

Intercalation-Based Single-Molecule Fluorescence Assay To Study DNA Supercoil Dynamics.

Ganji M, Kim SH, van der Torre J, Abbondanzieri E, Dekker C. Ganji M, et al. Among authors: dekker c. Nano Lett. 2016 Jul 13;16(7):4699-707. doi: 10.1021/acs.nanolett.6b02213. Epub 2016 Jul 1. Nano Lett. 2016. PMID: 27356180

10

Direct observation of DNA knots using a solid-state nanopore.

Plesa C, Verschueren D, Pud S, van der Torre J, Ruitenberg JW, Witteveen MJ, Jonsson MP, Grosberg AY, Rabin Y, Dekker C. Plesa C, et al. Among authors: dekker c. Nat Nanotechnol. 2016 Dec;11(12):1093-1097. doi: 10.1038/nnano.2016.153. Epub 2016 Aug 15. Nat Nanotechnol. 2016. PMID: 27525473

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