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T cell receptor sequence clustering and antigen specificity.
Comput Struct Biotechnol J. 2020 Aug 5;18:2166-2173. doi: 10.1016/j.csbj.2020.06.041. eCollection 2020.
Comput Struct Biotechnol J. 2020.
PMID: 32952933
Free PMC article.
Review.
RosettaDDGPrediction for high-throughput mutational scans: From stability to binding.
Sora V, Laspiur AO, Degn K, Arnaudi M, Utichi M, Beltrame L, De Menezes D, Orlandi M, Stoltze UK, Rigina O, Sackett PW, Wadt K, Schmiegelow K, Tiberti M, Papaleo E.
Sora V, et al.
Protein Sci. 2023 Jan;32(1):e4527. doi: 10.1002/pro.4527.
Protein Sci. 2023.
PMID: 36461907
Free PMC article.
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PDBminer to Find and Annotate Protein Structures for Computational Analysis.
Degn K, Beltrame L, Tiberti M, Papaleo E.
Degn K, et al.
J Chem Inf Model. 2023 Dec 11;63(23):7274-7281. doi: 10.1021/acs.jcim.3c00884. Epub 2023 Nov 17.
J Chem Inf Model. 2023.
PMID: 37977136
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Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks.
Nourbakhsh M, Degn K, Saksager A, Tiberti M, Papaleo E.
Nourbakhsh M, et al.
Brief Bioinform. 2024 Jan 22;25(2):bbad519. doi: 10.1093/bib/bbad519.
Brief Bioinform. 2024.
PMID: 38261338
Free PMC article.
Review.
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MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.
Tiberti M, Terkelsen T, Degn K, Beltrame L, Cremers TC, da Piedade I, Di Marco M, Maiani E, Papaleo E.
Tiberti M, et al.
Brief Bioinform. 2022 May 13;23(3):bbac074. doi: 10.1093/bib/bbac074.
Brief Bioinform. 2022.
PMID: 35323860
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Cancer-related Mutations with Local or Long-range Effects on an Allosteric Loop of p53.
Degn K, Beltrame L, Dahl Hede F, Sora V, Nicolaci V, Vabistsevits M, Schmiegelow K, Wadt K, Tiberti M, Lambrughi M, Papaleo E.
Degn K, et al.
J Mol Biol. 2022 Sep 15;434(17):167663. doi: 10.1016/j.jmb.2022.167663. Epub 2022 May 31.
J Mol Biol. 2022.
PMID: 35659507
Free article.
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