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Page 1
The founding charter of the Genomic Observatories Network.
Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, Scholin C, Vogler AP, Gates RD, Toonen R, Berteaux-Lecellier V, Barbier M, Barker K, Bertilsson S, Bicak M, Bietz MJ, Bobe J, Bodrossy L, Borja A, Coddington J, Fuhrman J, Gerdts G, Gillespie R, Goodwin K, Hanson PC, Hero JM, Hoekman D, Jansson J, Jeanthon C, Kao R, Klindworth A, Knight R, Kottmann R, Koo MS, Kotoulas G, Lowe AJ, Marteinsson VT, Meyer F, Morrison N, Myrold DD, Pafilis E, Parker S, Parnell JJ, Polymenakou PN, Ratnasingham S, Roderick GK, Rodriguez-Ezpeleta N, Schonrogge K, Simon N, Valette-Silver NJ, Springer YP, Stone GN, Stones-Havas S, Sansone SA, Thibault KM, Wecker P, Wichels A, Wooley JC, Yahara T, Zingone A; GOs-COS. Davies N, et al. Gigascience. 2014 Mar 7;3(1):2. doi: 10.1186/2047-217X-3-2. Gigascience. 2014. PMID: 24606731 Free PMC article.
A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.
Balk MA, Deck J, Emery KF, Walls RL, Reuter D, LaFrance R, Arroyo-Cabrales J, Barrett P, Blois J, Boileau A, Brenskelle L, Cannarozzi NR, Cruz JA, Dávalos LM, de la Sancha NU, Gyawali P, Hantak MM, Hopkins S, Kohli B, King JN, Koo MS, Lawing AM, Machado H, McCrane SM, McLean B, Morgan ME, Pilaar Birch S, Reed D, Reitz EJ, Sewnath N, Upham NS, Villaseñor A, Yohe L, Davis EB, Guralnick RP. Balk MA, et al. iScience. 2022 Sep 13;25(10):105101. doi: 10.1016/j.isci.2022.105101. eCollection 2022 Oct 21. iScience. 2022. PMID: 36212022 Free PMC article.
Importance of timely metadata curation to the global surveillance of genetic diversity.
Crandall ED, Toczydlowski RH, Liggins L, Holmes AE, Ghoojaei M, Gaither MR, Wham BE, Pritt AL, Noble C, Anderson TJ, Barton RL, Berg JT, Beskid SG, Delgado A, Farrell E, Himmelsbach N, Queeno SR, Trinh T, Weyand C, Bentley A, Deck J, Riginos C, Bradburd GS, Toonen RJ. Crandall ED, et al. Conserv Biol. 2023 Aug;37(4):e14061. doi: 10.1111/cobi.14061. Epub 2023 Mar 10. Conserv Biol. 2023. PMID: 36704891 Free PMC article.
The Global Genome Biodiversity Network (GGBN) Data Standard specification.
Droege G, Barker K, Seberg O, Coddington J, Benson E, Berendsohn WG, Bunk B, Butler C, Cawsey EM, Deck J, Döring M, Flemons P, Gemeinholzer B, Güntsch A, Hollowell T, Kelbert P, Kostadinov I, Kottmann R, Lawlor RT, Lyal C, Mackenzie-Dodds J, Meyer C, Mulcahy D, Nussbeck SY, O'Tuama É, Orrell T, Petersen G, Robertson T, Söhngen C, Whitacre J, Wieczorek J, Yilmaz P, Zetzsche H, Zhang Y, Zhou X. Droege G, et al. Database (Oxford). 2016 Oct 2;2016:baw125. doi: 10.1093/database/baw125. Print 2016. Database (Oxford). 2016. PMID: 27694206 Free PMC article.
Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research.
Riginos C, Crandall ED, Liggins L, Gaither MR, Ewing RB, Meyer C, Andrews KR, Euclide PT, Titus BM, Therkildsen NO, Salces-Castellano A, Stewart LC, Toonen RJ, Deck J. Riginos C, et al. Mol Ecol Resour. 2020 Nov;20(6):1458-1469. doi: 10.1111/1755-0998.13269. Epub 2020 Oct 27. Mol Ecol Resour. 2020. PMID: 33031625
Field information management systems for DNA barcoding.
Deck J, Gross J, Stones-Havas S, Davies N, Shapley R, Meyer C. Deck J, et al. Methods Mol Biol. 2012;858:255-67. doi: 10.1007/978-1-61779-591-6_12. Methods Mol Biol. 2012. PMID: 22684960
23 results