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Long-Read Sequencing to Unravel Complex Structural Variants of CEP78 Leading to Cone-Rod Dystrophy and Hearing Loss.
Ascari G, Rendtorff ND, De Bruyne M, De Zaeytijd J, Van Lint M, Bauwens M, Van Heetvelde M, Arno G, Jacob J, Creytens D, Van Dorpe J, Van Laethem T, Rosseel T, De Pooter T, De Rijk P, De Coster W, Menten B, Rey AD, Strazisar M, Bertelsen M, Tranebjaerg L, De Baere E. Ascari G, et al. Among authors: de coster w. Front Cell Dev Biol. 2021 Apr 21;9:664317. doi: 10.3389/fcell.2021.664317. eCollection 2021. Front Cell Dev Biol. 2021. PMID: 33968938 Free PMC article.
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation.
Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E; 1000 Genomes ONT Sequencing Consortium; University of Washington Center for Rare Disease Research (UW-CRDR); Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium; McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE. Gustafson JA, et al. Among authors: de coster w. medRxiv [Preprint]. 2024 Mar 7:2024.03.05.24303792. doi: 10.1101/2024.03.05.24303792. medRxiv. 2024. PMID: 38496498 Free PMC article. Preprint.
Loss of DPP6 in neurodegenerative dementia: a genetic player in the dysfunction of neuronal excitability.
Cacace R, Heeman B, Van Mossevelde S, De Roeck A, Hoogmartens J, De Rijk P, Gossye H, De Vos K, De Coster W, Strazisar M, De Baets G, Schymkowitz J, Rousseau F, Geerts N, De Pooter T, Peeters K, Sieben A, Martin JJ, Engelborghs S, Salmon E, Santens P, Vandenberghe R, Cras P, P De Deyn P, C van Swieten J, M van Duijn C, van der Zee J, Sleegers K, Van Broeckhoven C; BELNEU Consortium. Cacace R, et al. Among authors: de roeck a, de coster w, de pooter t, de baets g, de rijk p, de vos k. Acta Neuropathol. 2019 Jun;137(6):901-918. doi: 10.1007/s00401-019-01976-3. Epub 2019 Mar 14. Acta Neuropathol. 2019. PMID: 30874922 Free PMC article.
NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION.
De Roeck A, De Coster W, Bossaerts L, Cacace R, De Pooter T, Van Dongen J, D'Hert S, De Rijk P, Strazisar M, Van Broeckhoven C, Sleegers K. De Roeck A, et al. Among authors: de coster w, de pooter t, de rijk p. Genome Biol. 2019 Nov 14;20(1):239. doi: 10.1186/s13059-019-1856-3. Genome Biol. 2019. PMID: 31727106 Free PMC article.
Critical length in long-read resequencing.
De Coster W, Strazisar M, De Rijk P. De Coster W, et al. Among authors: de rijk p. NAR Genom Bioinform. 2020 Jan 13;2(1):lqz027. doi: 10.1093/nargab/lqz027. eCollection 2020 Mar. NAR Genom Bioinform. 2020. PMID: 33575574 Free PMC article.
Genomic Analysis of a Strain Collection Containing Multidrug-, Extensively Drug-, Pandrug-, and Carbapenem-Resistant Modern Clinical Isolates of Acinetobacter baumannii.
Valcek A, Nesporova K, Whiteway C, De Pooter T, De Coster W, Strazisar M, Van der Henst C. Valcek A, et al. Among authors: de coster w. Antimicrob Agents Chemother. 2022 Sep 20;66(9):e0089222. doi: 10.1128/aac.00892-22. Epub 2022 Aug 15. Antimicrob Agents Chemother. 2022. PMID: 35969073 Free PMC article.
Towards population-scale long-read sequencing.
De Coster W, Weissensteiner MH, Sedlazeck FJ. De Coster W, et al. Nat Rev Genet. 2021 Sep;22(9):572-587. doi: 10.1038/s41576-021-00367-3. Epub 2021 May 28. Nat Rev Genet. 2021. PMID: 34050336 Free PMC article. Review.
NanoPack: visualizing and processing long-read sequencing data.
De Coster W, D'Hert S, Schultz DT, Cruts M, Van Broeckhoven C. De Coster W, et al. Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149. Bioinformatics. 2018. PMID: 29547981 Free PMC article.
77 results