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Major impacts of widespread structural variation on sorghum.
Zhang Z, Gomes Viana JP, Zhang B, Walden KKO, Müller Paul H, Moose SP, Morris GP, Daum C, Barry KW, Shakoor N, Hudson ME. Zhang Z, et al. Among authors: daum c. Genome Res. 2024 Mar 20;34(2):286-299. doi: 10.1101/gr.278396.123. Genome Res. 2024. PMID: 38479835
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, Haas FB, Hiss M, Perroud PF, Jawdy SS, Yang Y, Hu R, Johnson J, Kropat J, Gallaher SD, Lipzen A, Shakirov EV, Weng X, Torres-Jerez I, Weers B, Conde D, Pappas MR, Liu L, Muchlinski A, Jiang H, Shyu C, Huang P, Sebastian J, Laiben C, Medlin A, Carey S, Carrell AA, Chen JG, Perales M, Swaminathan K, Allona I, Grattapaglia D, Cooper EA, Tholl D, Vogel JP, Weston DJ, Yang X, Brutnell TP, Kellogg EA, Baxter I, Udvardi M, Tang Y, Mockler TC, Juenger TE, Mullet J, Rensing SA, Tuskan GA, Merchant SS, Stacey G, Schmutz J. Sreedasyam A, et al. Among authors: daum c. Nucleic Acids Res. 2023 Sep 8;51(16):8383-8401. doi: 10.1093/nar/gkad616. Nucleic Acids Res. 2023. PMID: 37526283 Free PMC article.
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.
Craig RJ, Gallaher SD, Shu S, Salomé PA, Jenkins JW, Blaby-Haas CE, Purvine SO, O'Donnell S, Barry K, Grimwood J, Strenkert D, Kropat J, Daum C, Yoshinaga Y, Goodstein DM, Vallon O, Schmutz J, Merchant SS. Craig RJ, et al. Among authors: daum c. Plant Cell. 2023 Feb 20;35(2):644-672. doi: 10.1093/plcell/koac347. Plant Cell. 2023. PMID: 36562730 Free PMC article.
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H. Hensen N, et al. Among authors: daum c. Mol Phylogenet Evol. 2023 Dec;189:107938. doi: 10.1016/j.ympev.2023.107938. Epub 2023 Oct 10. Mol Phylogenet Evol. 2023. PMID: 37820761 Free article.
Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus.
Yao T, Zhang J, Yates TB, Shrestha HK, Engle NL, Ployet R, John C, Feng K, Bewg WP, Chen MSS, Lu H, Harding SA, Qiao Z, Jawdy SS, Shu M, Yuan W, Mozaffari K, Harman-Ware AE, Happs RM, York LM, Binder BM, Yoshinaga Y, Daum C, Tschaplinski TJ, Abraham PE, Tsai CJ, Barry K, Lipzen A, Schmutz J, Tuskan GA, Chen JG, Muchero W. Yao T, et al. Among authors: daum c. New Phytol. 2023 Sep;239(6):2248-2264. doi: 10.1111/nph.19126. Epub 2023 Jul 24. New Phytol. 2023. PMID: 37488708
187 results