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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Câmara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller AM, Kissmehl R, Klotz C, Koll F, Le Mouël A, Lepère G, Malinsky S, Nowacki M, Nowak JK, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Bétermier M, Weissenbach J, Scarpelli C, Schächter V, Sperling L, Meyer E, Cohen J, Wincker P. Aury JM, et al. Among authors: daubin v. Nature. 2006 Nov 9;444(7116):171-8. doi: 10.1038/nature05230. Epub 2006 Nov 1. Nature. 2006. PMID: 17086204
Databases of homologous gene families for comparative genomics.
Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Penel S, et al. Among authors: daubin v. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S3. doi: 10.1186/1471-2105-10-S6-S3. BMC Bioinformatics. 2009. PMID: 19534752 Free PMC article.
Genome-scale coestimation of species and gene trees.
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V. Boussau B, et al. Among authors: daubin v. Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6. Genome Res. 2013. PMID: 23132911 Free PMC article.
RecPhyloXML: a format for reconciled gene trees.
Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szöllosi G, Zhang L, Tannier É, Daubin V. Duchemin W, et al. Among authors: daubin v. Bioinformatics. 2018 Nov 1;34(21):3646-3652. doi: 10.1093/bioinformatics/bty389. Bioinformatics. 2018. PMID: 29762653 Free PMC article.
Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria.
Grébert T, Garczarek L, Daubin V, Humily F, Marie D, Ratin M, Devailly A, Farrant GK, Mary I, Mella-Flores D, Tanguy G, Labadie K, Wincker P, Kehoe DM, Partensky F. Grébert T, et al. Among authors: daubin v. Genome Biol Evol. 2022 Apr 10;14(4):evac035. doi: 10.1093/gbe/evac035. Genome Biol Evol. 2022. PMID: 35276007 Free PMC article.
64 results