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Ribonanza: deep learning of RNA structure through dual crowdsourcing.
He S, Huang R, Townley J, Kretsch RC, Karagianes TG, Cox DBT, Blair H, Penzar D, Vyaltsev V, Aristova E, Zinkevich A, Bakulin A, Sohn H, Krstevski D, Fukui T, Tatematsu F, Uchida Y, Jang D, Lee JS, Shieh R, Ma T, Martynov E, Shugaev MV, Bukhari HST, Fujikawa K, Onodera K, Henkel C, Ron S, Romano J, Nicol JJ, Nye GP, Wu Y, Choe C, Reade W, Participants E, Das R. He S, et al. Among authors: das r. bioRxiv [Preprint]. 2024 Feb 27:2024.02.24.581671. doi: 10.1101/2024.02.24.581671. bioRxiv. 2024. PMID: 38464325 Free PMC article. Preprint.
Theoretical basis for stabilizing messenger RNA through secondary structure design.
Wayment-Steele HK, Kim DS, Choe CA, Nicol JJ, Wellington-Oguri R, Watkins AM, Sperberg RAP, Huang PS, Participants E, Das R. Wayment-Steele HK, et al. Among authors: das r. bioRxiv [Preprint]. 2021 Feb 19:2020.08.22.262931. doi: 10.1101/2020.08.22.262931. bioRxiv. 2021. PMID: 32869022 Free PMC article. Updated. Preprint.
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics.
Leppek K, Byeon GW, Kladwang W, Wayment-Steele HK, Kerr CH, Xu AF, Kim DS, Topkar VV, Choe C, Rothschild D, Tiu GC, Wellington-Oguri R, Fujii K, Sharma E, Watkins AM, Nicol JJ, Romano J, Tunguz B, Participants E, Barna M, Das R. Leppek K, et al. Among authors: das r. bioRxiv [Preprint]. 2021 Mar 30:2021.03.29.437587. doi: 10.1101/2021.03.29.437587. bioRxiv. 2021. PMID: 33821271 Free PMC article. Updated. Preprint.
Deep learning models for predicting RNA degradation via dual crowdsourcing.
Wayment-Steele HK, Kladwang W, Watkins AM, Kim DS, Tunguz B, Reade W, Demkin M, Romano J, Wellington-Oguri R, Nicol JJ, Gao J, Onodera K, Fujikawa K, Mao H, Vandewiele G, Tinti M, Steenwinckel B, Ito T, Noumi T, He S, Ishi K, Lee Y, Öztürk F, Chiu KY, Öztürk E, Amer K, Fares M; Eterna Participants; Das R. Wayment-Steele HK, et al. Among authors: das r. Nat Mach Intell. 2022;4(12):1174-1184. doi: 10.1038/s42256-022-00571-8. Epub 2022 Dec 14. Nat Mach Intell. 2022. PMID: 36567960 Free PMC article.
Assessment of three-dimensional RNA structure prediction in CASP15.
Das R, Kretsch RC, Simpkin AJ, Mulvaney T, Pham P, Rangan R, Bu F, Keegan RM, Topf M, Rigden DJ, Miao Z, Westhof E. Das R, et al. bioRxiv [Preprint]. 2023 Oct 3:2023.04.25.538330. doi: 10.1101/2023.04.25.538330. bioRxiv. 2023. PMID: 37162955 Free PMC article. Updated. Preprint.
Compact RNA sensors for increasingly complex functions of multiple inputs.
Choe C, Andreasson JOL, Melaine F, Kladwang W, Wu MJ, Portela F, Wellington-Oguri R, Nicol JJ, Wayment-Steele HK, Gotrik M, Participants E, Khatri P, Greenleaf WJ, Das R. Choe C, et al. Among authors: das r. bioRxiv [Preprint]. 2024 Jan 16:2024.01.04.572289. doi: 10.1101/2024.01.04.572289. bioRxiv. 2024. PMID: 38260323 Free PMC article. Preprint.
Deep learning models for predicting RNA degradation via dual crowdsourcing.
Wayment-Steele HK, Kladwang W, Watkins AM, Kim DS, Tunguz B, Reade W, Demkin M, Romano J, Wellington-Oguri R, Nicol JJ, Gao J, Onodera K, Fujikawa K, Mao H, Vandewiele G, Tinti M, Steenwinckel B, Ito T, Noumi T, He S, Ishi K, Lee Y, Öztürk F, Chiu A, Öztürk E, Amer K, Fares M, Participants E, Das R. Wayment-Steele HK, et al. Among authors: das r. ArXiv [Preprint]. 2021 Oct 14:arXiv:2110.07531v2. ArXiv. 2021. PMID: 34671698 Free PMC article. Updated. Preprint.
3,525 results