Daley TP - Search Results

1

CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming.

Liu Y, Yu C, Daley TP, Wang F, Cao WS, Bhate S, Lin X, Still C 2nd, Liu H, Zhao D, Wang H, Xie XS, Ding S, Wong WH, Wernig M, Qi LS. Liu Y, et al. Among authors: daley tp. Cell Stem Cell. 2018 Nov 1;23(5):758-771.e8. doi: 10.1016/j.stem.2018.09.003. Epub 2018 Oct 11. Cell Stem Cell. 2018. PMID: 30318302 Free PMC article.

2

CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization.

Wang H, Xu X, Nguyen CM, Liu Y, Gao Y, Lin X, Daley T, Kipniss NH, La Russa M, Qi LS. Wang H, et al. Cell. 2018 Nov 15;175(5):1405-1417.e14. doi: 10.1016/j.cell.2018.09.013. Epub 2018 Oct 11. Cell. 2018. PMID: 30318144 Free PMC article.

3

A benchmark of algorithms for the analysis of pooled CRISPR screens.

Bodapati S, Daley TP, Lin X, Zou J, Qi LS. Bodapati S, et al. Among authors: daley tp. Genome Biol. 2020 Mar 9;21(1):62. doi: 10.1186/s13059-020-01972-x. Genome Biol. 2020. PMID: 32151271 Free PMC article. Review.

4

CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens.

Daley TP, Lin Z, Lin X, Liu Y, Wong WH, Qi LS. Daley TP, et al. Genome Biol. 2018 Oct 8;19(1):159. doi: 10.1186/s13059-018-1538-6. Genome Biol. 2018. PMID: 30296940 Free PMC article.

5

CRISPR-mediated live imaging of genome editing and transcription.

Wang H, Nakamura M, Abbott TR, Zhao D, Luo K, Yu C, Nguyen CM, Lo A, Daley TP, La Russa M, Liu Y, Qi LS. Wang H, et al. Among authors: daley tp. Science. 2019 Sep 20;365(6459):1301-1305. doi: 10.1126/science.aax7852. Epub 2019 Sep 5. Science. 2019. PMID: 31488703

6

Unsupervised clustering and epigenetic classification of single cells.

Zamanighomi M, Lin Z, Daley T, Chen X, Duren Z, Schep A, Greenleaf WJ, Wong WH. Zamanighomi M, et al. Nat Commun. 2018 Jun 20;9(1):2410. doi: 10.1038/s41467-018-04629-3. Nat Commun. 2018. PMID: 29925875 Free PMC article.

7

GEMINI: a variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens.

Zamanighomi M, Jain SS, Ito T, Pal D, Daley TP, Sellers WR. Zamanighomi M, et al. Among authors: daley tp. Genome Biol. 2019 Jul 12;20(1):137. doi: 10.1186/s13059-019-1745-9. Genome Biol. 2019. PMID: 31300006 Free PMC article.

8

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.

Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, Ophoff RA, Santana JR, Levanon EY, Woodruff PG, Burchard E, Seibold MA, Shifman S, Eskin E, Zaitlen N. Mangul S, et al. Genome Biol. 2018 Feb 15;19(1):36. doi: 10.1186/s13059-018-1403-7. Genome Biol. 2018. PMID: 29548336 Free PMC article.

9

Predicting the Number of Bases to Attain Sufficient Coverage in High-Throughput Sequencing Experiments.

Deng C, Daley T, Calabrese P, Ren J, Smith AD. Deng C, et al. J Comput Biol. 2020 Jul;27(7):1130-1143. doi: 10.1089/cmb.2019.0264. Epub 2019 Nov 15. J Comput Biol. 2020. PMID: 31725321 Free PMC article.

10

Predicting the molecular complexity of sequencing libraries.

Daley T, Smith AD. Daley T, et al. Nat Methods. 2013 Apr;10(4):325-7. doi: 10.1038/nmeth.2375. Epub 2013 Feb 24. Nat Methods. 2013. PMID: 23435259 Free PMC article.

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