Dalevi D - Search Results

1

Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures.

Dalevi D, Dubhashi D, Hermansson M. Dalevi D, et al. Bioinformatics. 2006 Mar 1;22(5):517-22. doi: 10.1093/bioinformatics/btk029. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403797

2

A new order estimator for fixed and variable length Markov models with applications to DNA sequence similarity.

Dalevi D, Dubhashi D, Hermansson M. Dalevi D, et al. Stat Appl Genet Mol Biol. 2006;5:Article8. doi: 10.2202/1544-6115.1214. Epub 2006 Mar 17. Stat Appl Genet Mol Biol. 2006. PMID: 16646872

3

Expected gene-order distances and model selection in bacteria.

Dalevi D, Eriksen N. Dalevi D, et al. Bioinformatics. 2008 Jun 1;24(11):1332-8. doi: 10.1093/bioinformatics/btn111. Epub 2008 Apr 1. Bioinformatics. 2008. PMID: 18381402

4

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.

Kristiansson E, Hugenholtz P, Dalevi D. Kristiansson E, et al. Among authors: dalevi d. Bioinformatics. 2009 Oct 15;25(20):2737-8. doi: 10.1093/bioinformatics/btp508. Epub 2009 Aug 20. Bioinformatics. 2009. PMID: 19696045

5

Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

Hooper SD, Dalevi D, Pati A, Mavromatis K, Ivanova NN, Kyrpides NC. Hooper SD, et al. Among authors: dalevi d. Bioinformatics. 2010 Feb 1;26(3):295-301. doi: 10.1093/bioinformatics/btp687. Epub 2009 Dec 14. Bioinformatics. 2010. PMID: 20008478 Free PMC article.

6

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.

Cvijović M, Dalevi D, Bilsland E, Kemp GJ, Sunnerhagen P. Cvijović M, et al. Among authors: dalevi d. BMC Bioinformatics. 2007 Aug 8;8:295. doi: 10.1186/1471-2105-8-295. BMC Bioinformatics. 2007. PMID: 17686169 Free PMC article.

7

Annotation of metagenome short reads using proxygenes.

Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, Markowitz VM. Dalevi D, et al. Bioinformatics. 2008 Aug 15;24(16):i7-13. doi: 10.1093/bioinformatics/btn276. Bioinformatics. 2008. PMID: 18689842

8

Measuring genome divergence in bacteria: a case study using chlamydian data.

Dalevi DA, Eriksen N, Eriksson K, Andersson SG. Dalevi DA, et al. J Mol Evol. 2002 Jul;55(1):24-36. doi: 10.1007/s00239-001-0087-9. J Mol Evol. 2002. PMID: 12165840

9

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting.

Samuelsson J, Dalevi D, Levander F, Rögnvaldsson T. Samuelsson J, et al. Among authors: dalevi d. Bioinformatics. 2004 Dec 12;20(18):3628-35. doi: 10.1093/bioinformatics/bth460. Epub 2004 Aug 5. Bioinformatics. 2004. PMID: 15297302

10

Testing of chromosomal clumping of gene properties.

Fernandez-Ricaud L, Dalevi D, Blomberg A, Nerman O. Fernandez-Ricaud L, et al. Among authors: dalevi d. Stat Appl Genet Mol Biol. 2009;8:Article 19. doi: 10.2202/1544-6115.1428. Epub 2009 Feb 26. Stat Appl Genet Mol Biol. 2009. PMID: 19341353

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