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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
F1000Res. 2022 May 16;11:530. doi: 10.12688/f1000research.110194.1. eCollection 2022.
F1000Res. 2022.
PMID: 36262335
Free PMC article.
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates.
Mc Cartney AM, Mahmoud M, Jochum M, Agustinho DP, Zorman B, Al Khleifat A, Dabbaghie F, K Kesharwani R, Smolka M, Dawood M, Albin D, Aliyev E, Almabrazi H, Arslan A, Balaji A, Behera S, Billingsley K, L Cameron D, Daw J, T Dawson E, De Coster W, Du H, Dunn C, Esteban R, Jolly A, Kalra D, Liao C, Liu Y, Lu TY, M Havrilla J, M Khayat M, Marin M, Monlong J, Price S, Rafael Gener A, Ren J, Sagayaradj S, Sapoval N, Sinner C, C Soto D, Soylev A, Subramaniyan A, Syed N, Tadimeti N, Tater P, Vats P, Vaughn J, Walker K, Wang G, Zeng Q, Zhang S, Zhao T, Kille B, Biederstedt E, Chaisson M, English A, Kronenberg Z, J Treangen T, Hefferon T, Chin CS, Busby B, J Sedlazeck F.
Mc Cartney AM, et al. Among authors: dabbaghie f.
F1000Res. 2021 Mar 26;10:246. doi: 10.12688/f1000research.51477.2. eCollection 2021.
F1000Res. 2021.
PMID: 34621504
Free PMC article.
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BubbleGun: enumerating bubbles and superbubbles in genome graphs.
Dabbaghie F, Ebler J, Marschall T.
Dabbaghie F, et al.
Bioinformatics. 2022 Sep 2;38(17):4217-4219. doi: 10.1093/bioinformatics/btac448.
Bioinformatics. 2022.
PMID: 35799353
Free PMC article.
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PanPA: generation and alignment of panproteome graphs.
Dabbaghie F, Srikakulam SK, Marschall T, Kalinina OV.
Dabbaghie F, et al.
Bioinform Adv. 2023 Nov 24;3(1):vbad167. doi: 10.1093/bioadv/vbad167. eCollection 2023.
Bioinform Adv. 2023.
PMID: 38145107
Free PMC article.
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MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants.
Srikakulam SK, Keller S, Dabbaghie F, Bals R, Kalinina OV.
Srikakulam SK, et al. Among authors: dabbaghie f.
Bioinformatics. 2023 Mar 1;39(3):btad101. doi: 10.1093/bioinformatics/btad101.
Bioinformatics. 2023.
PMID: 36825843
Free PMC article.
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