DP2 GM123495/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2018	1
2019	4
2020	2
2021	7
2022	5
2023	2
2024	0

1

Cell-type specificity of the human mutation landscape with respect to DNA replication dynamics.

Caballero M, Boos D, Koren A. Caballero M, et al. Cell Genom. 2023 May 2;3(6):100315. doi: 10.1016/j.xgen.2023.100315. eCollection 2023 Jun 14. Cell Genom. 2023. PMID: 37388911 Free PMC article.

2

The landscape of somatic mutations in lymphoblastoid cell lines.

Caballero M, Koren A. Caballero M, et al. Cell Genom. 2023 May 2;3(6):100305. doi: 10.1016/j.xgen.2023.100305. eCollection 2023 Jun 14. Cell Genom. 2023. PMID: 37388907 Free PMC article.

3

Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer.

Webster ALH, Sanders MA, Patel K, Dietrich R, Noonan RJ, Lach FP, White RR, Goldfarb A, Hadi K, Edwards MM, Donovan FX, Hoogenboezem RM, Jung M, Sridhar S, Wiley TF, Fedrigo O, Tian H, Rosiene J, Heineman T, Kennedy JA, Bean L, Rosti RO, Tryon R, Gonzalez AM, Rosenberg A, Luo JD, Carroll TS, Shroff S, Beaumont M, Velleuer E, Rastatter JC, Wells SI, Surrallés J, Bagby G, MacMillan ML, Wagner JE, Cancio M, Boulad F, Scognamiglio T, Vaughan R, Beaumont KG, Koren A, Imielinski M, Chandrasekharappa SC, Auerbach AD, Singh B, Kutler DI, Campbell PJ, Smogorzewska A. Webster ALH, et al. Nature. 2022 Dec;612(7940):495-502. doi: 10.1038/s41586-022-05253-4. Epub 2022 Nov 30. Nature. 2022. PMID: 36450981 Free PMC article.

4

Error-prone repair of stalled replication forks drives mutagenesis and loss of heterozygosity in haploinsufficient BRCA1 cells.

Deshpande M, Paniza T, Jalloul N, Nanjangud G, Twarowski J, Koren A, Zaninovic N, Zhan Q, Chadalavada K, Malkova A, Khiabanian H, Madireddy A, Rosenwaks Z, Gerhardt J. Deshpande M, et al. Mol Cell. 2022 Oct 20;82(20):3781-3793.e7. doi: 10.1016/j.molcel.2022.08.017. Epub 2022 Sep 12. Mol Cell. 2022. PMID: 36099913 Free article.

5

Telomere-to-telomere human DNA replication timing profiles.

Massey DJ, Koren A. Massey DJ, et al. Sci Rep. 2022 Jun 10;12(1):9560. doi: 10.1038/s41598-022-13638-8. Sci Rep. 2022. PMID: 35688856 Free PMC article.

6

High-throughput analysis of single human cells reveals the complex nature of DNA replication timing control.

Massey DJ, Koren A. Massey DJ, et al. Nat Commun. 2022 May 3;13(1):2402. doi: 10.1038/s41467-022-30212-y. Nat Commun. 2022. PMID: 35504890 Free PMC article.

7

Comprehensive analysis of DNA replication timing across 184 cell lines suggests a role for MCM10 in replication timing regulation.

Caballero M, Ge T, Rebelo AR, Seo S, Kim S, Brooks K, Zuccaro M, Kanagaraj R, Vershkov D, Kim D, Smogorzewska A, Smolka M, Benvenisty N, West SC, Egli D, Mace EM, Koren A. Caballero M, et al. Hum Mol Genet. 2022 Aug 25;31(17):2899-2917. doi: 10.1093/hmg/ddac082. Hum Mol Genet. 2022. PMID: 35394024 Free PMC article.

8

The genetic architecture of DNA replication timing in human pluripotent stem cells.

Ding Q, Edwards MM, Wang N, Zhu X, Bracci AN, Hulke ML, Hu Y, Tong Y, Hsiao J, Charvet CJ, Ghosh S, Handsaker RE, Eggan K, Merkle FT, Gerhardt J, Egli D, Clark AG, Koren A. Ding Q, et al. Nat Commun. 2021 Nov 19;12(1):6746. doi: 10.1038/s41467-021-27115-9. Nat Commun. 2021. PMID: 34799581 Free PMC article.

9

Replication timing analysis in polyploid cells reveals Rif1 uses multiple mechanisms to promote underreplication in Drosophila.

Das S, Caballero M, Kolesnikova T, Zhimulev I, Koren A, Nordman J. Das S, et al. Genetics. 2021 Nov 5;219(3):iyab147. doi: 10.1093/genetics/iyab147. Genetics. 2021. PMID: 34740250 Free PMC article.

10

Cancer Mutational Processes Vary in Their Association with Replication Timing and Chromatin Accessibility.

Yaacov A, Vardi O, Blumenfeld B, Greenberg A, Massey DJ, Koren A, Adar S, Simon I, Rosenberg S. Yaacov A, et al. Cancer Res. 2021 Dec 15;81(24):6106-6116. doi: 10.1158/0008-5472.CAN-21-2039. Epub 2021 Oct 26. Cancer Res. 2021. PMID: 34702725

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