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Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay.
Dölken L, Malterer G, Erhard F, Kothe S, Friedel CC, Suffert G, Marcinowski L, Motsch N, Barth S, Beitzinger M, Lieber D, Bailer SM, Hoffmann R, Ruzsics Z, Kremmer E, Pfeffer S, Zimmer R, Koszinowski UH, Grässer F, Meister G, Haas J. Dölken L, et al. Cell Host Microbe. 2010 Apr 22;7(4):324-334. doi: 10.1016/j.chom.2010.03.008. Cell Host Microbe. 2010. PMID: 20413099 Free article.
Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.
Marcinowski L, Tanguy M, Krmpotic A, Rädle B, Lisnić VJ, Tuddenham L, Chane-Woon-Ming B, Ruzsics Z, Erhard F, Benkartek C, Babic M, Zimmer R, Trgovcich J, Koszinowski UH, Jonjic S, Pfeffer S, Dölken L. Marcinowski L, et al. Among authors: dolken l. PLoS Pathog. 2012 Feb;8(2):e1002510. doi: 10.1371/journal.ppat.1002510. Epub 2012 Feb 9. PLoS Pathog. 2012. PMID: 22346748 Free PMC article.
RIP-chip enrichment analysis.
Erhard F, Dölken L, Zimmer R. Erhard F, et al. Among authors: dolken l. Bioinformatics. 2013 Jan 1;29(1):77-83. doi: 10.1093/bioinformatics/bts631. Epub 2012 Oct 26. Bioinformatics. 2013. PMID: 23104891
Widespread context dependency of microRNA-mediated regulation.
Erhard F, Haas J, Lieber D, Malterer G, Jaskiewicz L, Zavolan M, Dölken L, Zimmer R. Erhard F, et al. Among authors: dolken l. Genome Res. 2014 Jun;24(6):906-19. doi: 10.1101/gr.166702.113. Epub 2014 Mar 25. Genome Res. 2014. PMID: 24668909 Free PMC article.
Widespread disruption of host transcription termination in HSV-1 infection.
Rutkowski AJ, Erhard F, L'Hernault A, Bonfert T, Schilhabel M, Crump C, Rosenstiel P, Efstathiou S, Zimmer R, Friedel CC, Dölken L. Rutkowski AJ, et al. Among authors: l hernault a, dolken l. Nat Commun. 2015 May 20;6:7126. doi: 10.1038/ncomms8126. Nat Commun. 2015. PMID: 25989971 Free PMC article.
Improved Ribo-seq enables identification of cryptic translation events.
Erhard F, Halenius A, Zimmermann C, L'Hernault A, Kowalewski DJ, Weekes MP, Stevanovic S, Zimmer R, Dölken L. Erhard F, et al. Among authors: l hernault a, dolken l. Nat Methods. 2018 May;15(5):363-366. doi: 10.1038/nmeth.4631. Epub 2018 Mar 12. Nat Methods. 2018. PMID: 29529017 Free PMC article.
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes.
Hennig T, Michalski M, Rutkowski AJ, Djakovic L, Whisnant AW, Friedl MS, Jha BA, Baptista MAP, L'Hernault A, Erhard F, Dölken L, Friedel CC. Hennig T, et al. Among authors: l hernault a, dolken l. PLoS Pathog. 2018 Mar 26;14(3):e1006954. doi: 10.1371/journal.ppat.1006954. eCollection 2018 Mar. PLoS Pathog. 2018. PMID: 29579120 Free PMC article.
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