D'Antonio M - Search Results

1

CoVaCS: a consensus variant calling system.

Chiara M, Gioiosa S, Chillemi G, D'Antonio M, Flati T, Picardi E, Zambelli F, Horner DS, Pesole G, Castrignanò T. Chiara M, et al. BMC Genomics. 2018 Feb 5;19(1):120. doi: 10.1186/s12864-018-4508-1. BMC Genomics. 2018. PMID: 29402227 Free PMC article.

2

WEP: a high-performance analysis pipeline for whole-exome data.

D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S11. doi: 10.1186/1471-2105-14-S7-S11. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815231 Free PMC article.

3

MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies.

Lupi R, de Meo PD, Picardi E, D'Antonio M, Paoletti D, Castrignanò T, Pesole G, Gissi C. Lupi R, et al. Mitochondrion. 2010 Mar;10(2):192-9. doi: 10.1016/j.mito.2010.01.004. Epub 2010 Jan 18. Mitochondrion. 2010. PMID: 20080208

4

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.

Picardi E, D'Antonio M, Carrabino D, Castrignanò T, Pesole G. Picardi E, et al. Bioinformatics. 2011 May 1;27(9):1311-2. doi: 10.1093/bioinformatics/btr117. Epub 2011 Mar 22. Bioinformatics. 2011. PMID: 21427194

5

SpliceAid-F: a database of human splicing factors and their RNA-binding sites.

Giulietti M, Piva F, D'Antonio M, D'Onorio De Meo P, Paoletti D, Castrignanò T, D'Erchia AM, Picardi E, Zambelli F, Principato G, Pavesi G, Pesole G. Giulietti M, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D125-31. doi: 10.1093/nar/gks997. Epub 2012 Oct 30. Nucleic Acids Res. 2013. PMID: 23118479 Free PMC article.

6

Exploring the RNA editing potential of RNA-Seq data by ExpEdit.

D'Antonio M, Picardi E, Castrignanò T, D'Erchia AM, Pesole G. D'Antonio M, et al. Methods Mol Biol. 2015;1269:327-38. doi: 10.1007/978-1-4939-2291-8_20. Methods Mol Biol. 2015. PMID: 25577388

7

ASPicDB: a database web tool for alternative splicing analysis.

D'Antonio M, Castrgnanò T, Pallocca M, D'Erchia AM, Picardi E, Pesole G. D'Antonio M, et al. Methods Mol Biol. 2015;1269:365-78. doi: 10.1007/978-1-4939-2291-8_23. Methods Mol Biol. 2015. PMID: 25577391

8

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.

D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignanò T, Pesole G. D'Antonio M, et al. BMC Genomics. 2015;16(Suppl 6):S3. doi: 10.1186/1471-2164-16-S6-S3. Epub 2015 Jun 1. BMC Genomics. 2015. PMID: 26046471 Free PMC article.

9

RAP: A Web Tool for RNA-Seq Data Analysis.

D'Antonio M, Libro P, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Methods Mol Biol. 2021;2284:393-415. doi: 10.1007/978-1-0716-1307-8_21. Methods Mol Biol. 2021. PMID: 33835454

10

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.

D'Onorio de Meo P, D'Antonio M, Griggio F, Lupi R, Borsani M, Pavesi G, Castrignanò T, Pesole G, Gissi C. D'Onorio de Meo P, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1168-72. doi: 10.1093/nar/gkr1144. Epub 2011 Nov 28. Nucleic Acids Res. 2012. PMID: 22123747 Free PMC article.

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