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A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa.
Nat Commun. 2023 Oct 23;14(1):6392. doi: 10.1038/s41467-023-41152-6.
Nat Commun. 2023.
PMID: 37872141
Free PMC article.
Review.
Fluoroquinolone resistance in Salmonella: insights by whole-genome sequencing.
Cuypers WL, Jacobs J, Wong V, Klemm EJ, Deborggraeve S, Van Puyvelde S.
Cuypers WL, et al.
Microb Genom. 2018 Jul;4(7):e000195. doi: 10.1099/mgen.0.000195. Epub 2018 Jul 5.
Microb Genom. 2018.
PMID: 29975627
Free PMC article.
Review.
Item in Clipboard
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.
Cuypers WL, Meysman P, Weill FX, Hendriksen RS, Beyene G, Wain J, Nair S, Chattaway MA, Perez-Sepulveda BM, Ceyssens PJ, de Block T, Lee WWY, Pardos de la Gandara M, Kornschober C, Moran-Gilad J, Veldman KT, Cormican M, Torpdahl M, Fields PI, Černý T, Hardy L, Tack B, Mellor KC, Thomson N, Dougan G, Deborggraeve S, Jacobs J, Laukens K, Van Puyvelde S.
Cuypers WL, et al.
Nat Commun. 2023 Jun 14;14(1):3517. doi: 10.1038/s41467-023-38902-x.
Nat Commun. 2023.
PMID: 37316492
Free PMC article.
Review.
Item in Clipboard
Salmonella Typhi whole genome sequencing in Rwanda shows a diverse historical population with recent introduction of haplotype H58.
Rutanga JP, de Block T, Cuypers WL, Cafmeyer J, Peeters M, Umumararungu E, Ngabonziza JCS, Rucogoza A, Vandenberg O, Martiny D, Dusabe A, Nkubana T, Dougan G, Muvunyi CM, Mwikarago IE, Jacobs J, Deborggraeve S, Van Puyvelde S.
Rutanga JP, et al. Among authors: cuypers wl.
PLoS Negl Trop Dis. 2023 Jun 16;17(6):e0011285. doi: 10.1371/journal.pntd.0011285. eCollection 2023 Jun.
PLoS Negl Trop Dis. 2023.
PMID: 37327220
Free PMC article.
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Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling.
De Meulenaere K, Cuypers WL, Gauglitz JM, Guetens P, Rosanas-Urgell A, Laukens K, Cuypers B.
De Meulenaere K, et al. Among authors: cuypers wl.
mBio. 2024 Jan 16;15(1):e0196723. doi: 10.1128/mbio.01967-23. Epub 2023 Dec 6.
mBio. 2024.
PMID: 38054750
Free PMC article.
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Highlights from the 16th International Society for Computational Biology Student Council Symposium 2020.
Cuypers WL, Dönertaş HM, Grewal JK, Fatima N, Donnelly C, Mer AS, Krieger S, Cuypers B, Rahman F.
Cuypers WL, et al.
F1000Res. 2021 Jun 4;10:ISCB Comm J-443. doi: 10.12688/f1000research.53408.1. eCollection 2021.
F1000Res. 2021.
PMID: 34136128
Free PMC article.
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