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Ultra-high throughput mapping of genetic design space.
bioRxiv [Preprint]. 2023 Jul 6:2023.03.16.532704. doi: 10.1101/2023.03.16.532704.
bioRxiv. 2023.
PMID: 36993481
Free PMC article.
Preprint.
It takes guts to learn: machine learning techniques for disease detection from the gut microbiome.
Curry KD, Nute MG, Treangen TJ.
Curry KD, et al.
Emerg Top Life Sci. 2021 Dec 21;5(6):815-827. doi: 10.1042/ETLS20210213.
Emerg Top Life Sci. 2021.
PMID: 34779841
Free PMC article.
Review.
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Fecal Microbiota Transplantation Derived from Alzheimer's Disease Mice Worsens Brain Trauma Outcomes in Wild-Type Controls.
Soriano S, Curry K, Wang Q, Chow E, Treangen TJ, Villapol S.
Soriano S, et al.
Int J Mol Sci. 2022 Apr 19;23(9):4476. doi: 10.3390/ijms23094476.
Int J Mol Sci. 2022.
PMID: 35562867
Free PMC article.
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Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs.
Curry KD, Yu FB, Vance SE, Segarra S, Bhaya D, Chikhi R, Rocha EPC, Treangen TJ.
Curry KD, et al.
bioRxiv [Preprint]. 2024 Jan 30:2024.01.25.577285. doi: 10.1101/2024.01.25.577285.
bioRxiv. 2024.
PMID: 38352454
Free PMC article.
Preprint.
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Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu.
Curry KD, Soriano S, Nute MG, Villapol S, Dilthey A, Treangen TJ.
Curry KD, et al.
Curr Protoc. 2024 Mar;4(3):e978. doi: 10.1002/cpz1.978.
Curr Protoc. 2024.
PMID: 38511467
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Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.
Curry KD, Wang Q, Nute MG, Tyshaieva A, Reeves E, Soriano S, Wu Q, Graeber E, Finzer P, Mendling W, Savidge T, Villapol S, Dilthey A, Treangen TJ.
Curry KD, et al.
Nat Methods. 2022 Jul;19(7):845-853. doi: 10.1038/s41592-022-01520-4. Epub 2022 Jun 30.
Nat Methods. 2022.
PMID: 35773532
Free PMC article.
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Analysis of bronchoalveolar lavage fluid metatranscriptomes among patients with COVID-19 disease.
Jochum M, Lee MD, Curry K, Zaksas V, Vitalis E, Treangen T, Aagaard K, Ternus KL.
Jochum M, et al.
Sci Rep. 2022 Dec 7;12(1):21125. doi: 10.1038/s41598-022-25463-0.
Sci Rep. 2022.
PMID: 36476670
Free PMC article.
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Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort: A pilot study.
Soriano S, Curry K, Sadrameli SS, Wang Q, Nute M, Reeves E, Kabir R, Wiese J, Criswell A, Schodrof S, Britz GW, Gadhia R, Podell K, Treangen T, Villapol S.
Soriano S, et al.
Brain Behav Immun Health. 2022 Mar 1;21:100438. doi: 10.1016/j.bbih.2022.100438. eCollection 2022 May.
Brain Behav Immun Health. 2022.
PMID: 35284846
Free PMC article.
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