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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. Gautreau G, et al. Among authors: cruveiller s. PLoS Comput Biol. 2020 Mar 19;16(3):e1007732. doi: 10.1371/journal.pcbi.1007732. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32191703 Free PMC article.
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith AA, Weiman M, Médigue C. Vallenet D, et al. Among authors: cruveiller s. Nucleic Acids Res. 2013 Jan;41(Database issue):D636-47. doi: 10.1093/nar/gks1194. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193269 Free PMC article.
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. Gautreau G, et al. Among authors: cruveiller s. PLoS Comput Biol. 2021 Dec 10;17(12):e1009687. doi: 10.1371/journal.pcbi.1009687. eCollection 2021 Dec. PLoS Comput Biol. 2021. PMID: 34890406 Free PMC article.
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D. Médigue C, et al. Among authors: cruveiller s. Brief Bioinform. 2019 Jul 19;20(4):1071-1084. doi: 10.1093/bib/bbx113. Brief Bioinform. 2019. PMID: 28968784 Free PMC article.
AMIGene: Annotation of MIcrobial Genes.
Bocs S, Cruveiller S, Vallenet D, Nuel G, Médigue C. Bocs S, et al. Among authors: cruveiller s. Nucleic Acids Res. 2003 Jul 1;31(13):3723-6. doi: 10.1093/nar/gkg590. Nucleic Acids Res. 2003. PMID: 12824403 Free PMC article.
MaGe: a microbial genome annotation system supported by synteny results.
Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C. Vallenet D, et al. Among authors: cruveiller s. Nucleic Acids Res. 2006 Jan 10;34(1):53-65. doi: 10.1093/nar/gkj406. Print 2006. Nucleic Acids Res. 2006. PMID: 16407324 Free PMC article.
Comparative analysis of Acinetobacters: three genomes for three lifestyles.
Vallenet D, Nordmann P, Barbe V, Poirel L, Mangenot S, Bataille E, Dossat C, Gas S, Kreimeyer A, Lenoble P, Oztas S, Poulain J, Segurens B, Robert C, Abergel C, Claverie JM, Raoult D, Médigue C, Weissenbach J, Cruveiller S. Vallenet D, et al. Among authors: cruveiller s. PLoS One. 2008 Mar 19;3(3):e1805. doi: 10.1371/journal.pone.0001805. PLoS One. 2008. PMID: 18350144 Free PMC article.
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E. Touchon M, et al. Among authors: cruveiller s. PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23. PLoS Genet. 2009. PMID: 19165319 Free PMC article.
85 results