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Dense genomic sampling identifies highways of pneumococcal recombination.
Chewapreecha C, Harris SR, Croucher NJ, Turner C, Marttinen P, Cheng L, Pessia A, Aanensen DM, Mather AE, Page AJ, Salter SJ, Harris D, Nosten F, Goldblatt D, Corander J, Parkhill J, Turner P, Bentley SD. Chewapreecha C, et al. Among authors: croucher nj. Nat Genet. 2014 Mar;46(3):305-309. doi: 10.1038/ng.2895. Epub 2014 Feb 9. Nat Genet. 2014. PMID: 24509479 Free PMC article.
Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis.
Lees JA, Kremer PHC, Manso AS, Croucher NJ, Ferwerda B, Serón MV, Oggioni MR, Parkhill J, Brouwer MC, van der Ende A, van de Beek D, Bentley SD. Lees JA, et al. Among authors: croucher nj. Microb Genom. 2017 Jan 31;3(1):e000103. doi: 10.1099/mgen.0.000103. eCollection 2017 Jan. Microb Genom. 2017. PMID: 28348877 Free PMC article.
The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI. Cremers AJH, et al. Among authors: croucher nj. Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417. Clin Infect Dis. 2019. PMID: 29788414
SuperDCA for genome-wide epistasis analysis.
Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Among authors: croucher nj. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.
PANINI: Pangenome Neighbour Identification for Bacterial Populations.
Abudahab K, Prada JM, Yang Z, Bentley SD, Croucher NJ, Corander J, Aanensen DM. Abudahab K, et al. Among authors: croucher nj. Microb Genom. 2019 Apr;5(4):e000220. doi: 10.1099/mgen.0.000220. Epub 2018 Nov 22. Microb Genom. 2019. PMID: 30465642 Free PMC article.
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN, Corander J, Bentley SD, Croucher NJ. Lees JA, et al. Among authors: croucher nj. Genome Res. 2019 Feb;29(2):304-316. doi: 10.1101/gr.241455.118. Epub 2019 Jan 24. Genome Res. 2019. PMID: 30679308 Free PMC article.
108 results