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Fast and flexible bacterial genomic epidemiology with PopPUNK.
Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN, Corander J, Bentley SD, Croucher NJ. Lees JA, et al. Among authors: croucher nj. Genome Res. 2019 Feb;29(2):304-316. doi: 10.1101/gr.241455.118. Epub 2019 Jan 24. Genome Res. 2019. PMID: 30679308 Free PMC article.
Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes.
Vieira A, Wan Y, Ryan Y, Li HK, Guy RL, Papangeli M, Huse KK, Reeves LC, Soo VWC, Daniel R, Harley A, Broughton K, Dhami C, Ganner M, Ganner MA, Mumin Z, Razaei M, Rundberg E, Mammadov R, Mills EA, Sgro V, Mok KY, Didelot X, Croucher NJ, Jauneikaite E, Lamagni T, Brown CS, Coelho J, Sriskandan S. Vieira A, et al. Among authors: croucher nj. Nat Commun. 2024 May 10;15(1):3916. doi: 10.1038/s41467-024-47929-7. Nat Commun. 2024. PMID: 38729927 Free PMC article.
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.
Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB, Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM, Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C, Bentley S, Barrell BG, Schultsz C, Maskell DJ, Parkhill J. Holden MT, et al. Among authors: croucher nj. PLoS One. 2009 Jul 15;4(7):e6072. doi: 10.1371/journal.pone.0006072. PLoS One. 2009. PMID: 19603075 Free PMC article.
From small reads do mighty genomes grow.
Croucher NJ. Croucher NJ. Nat Rev Microbiol. 2009 Sep;7(9):621. doi: 10.1038/nrmicro2211. Nat Rev Microbiol. 2009. PMID: 19680245
Studying bacterial transcriptomes using RNA-seq.
Croucher NJ, Thomson NR. Croucher NJ, et al. Curr Opin Microbiol. 2010 Oct;13(5):619-24. doi: 10.1016/j.mib.2010.09.009. Epub 2010 Sep 29. Curr Opin Microbiol. 2010. PMID: 20888288 Free PMC article. Review.
107 results