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Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost.
mSystems. 2024 Jan 23;9(1):e0069823. doi: 10.1128/msystems.00698-23. Epub 2023 Dec 8.
mSystems. 2024.
PMID: 38063415
Free PMC article.
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.
Zayed AA, Wainaina JM, Dominguez-Huerta G, Pelletier E, Guo J, Mohssen M, Tian F, Pratama AA, Bolduc B, Zablocki O, Cronin D, Solden L, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Ruscheweyh HJ, Salazar G, Shatoff E; Tara Oceans Coordinators‡; Bundschuh R, Fredrick K, Kubatko LS, Chaffron S, Culley AI, Sunagawa S, Kuhn JH, Wincker P, Sullivan MB, Acinas SG, Babin M, Bork P, Boss E, Bowler C, Cochrane G, de Vargas C, Gorsky G, Guidi L, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Kandels S, Karp-Boss L, Karsenti E, Not F, Ogata H, Poulton N, Pesant S, Sardet C, Speich S, Stemmann L, Sullivan MB, Sungawa S, Wincker P.
Zayed AA, et al.
Science. 2022 Apr 8;376(6589):156-162. doi: 10.1126/science.abm5847. Epub 2022 Apr 7.
Science. 2022.
PMID: 35389782
Free PMC article.
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Biosynthetic potential of the global ocean microbiome.
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlström CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sánchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J, Sunagawa S.
Paoli L, et al. Among authors: cronin dr.
Nature. 2022 Jul;607(7917):111-118. doi: 10.1038/s41586-022-04862-3. Epub 2022 Jun 22.
Nature. 2022.
PMID: 35732736
Free PMC article.
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
Zayed AA, Lücking D, Mohssen M, Cronin D, Bolduc B, Gregory AC, Hargreaves KR, Piehowski PD, White Iii RA, Huang EL, Adkins JN, Roux S, Moraru C, Sullivan MB.
Zayed AA, et al.
Bioinformatics. 2021 Nov 18;37(22):4202-4208. doi: 10.1093/bioinformatics/btab451.
Bioinformatics. 2021.
PMID: 34132786
Free PMC article.
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Long-read powered viral metagenomics in the oligotrophic Sargasso Sea.
Warwick-Dugdale J, Tian F, Michelsen ML, Cronin DR, Moore K, Farbos A, Chittick L, Bell A, Zayed AA, Buchholz HH, Bolanos LM, Parsons RJ, Allen MJ, Sullivan MB, Temperton B.
Warwick-Dugdale J, et al. Among authors: cronin dr.
Nat Commun. 2024 May 14;15(1):4089. doi: 10.1038/s41467-024-48300-6.
Nat Commun. 2024.
PMID: 38744831
Free PMC article.
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Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data.
Köksal AS, Beck K, Cronin DR, McKenna A, Camp ND, Srivastava S, MacGilvray ME, Bodík R, Wolf-Yadlin A, Fraenkel E, Fisher J, Gitter A.
Köksal AS, et al. Among authors: cronin dr.
Cell Rep. 2018 Sep 25;24(13):3607-3618. doi: 10.1016/j.celrep.2018.08.085.
Cell Rep. 2018.
PMID: 30257219
Free PMC article.
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