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Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.
Pine PS, Lund SP, Parsons JR, Vang LK, Mahabal AA, Cinquini L, Kelly SC, Kincaid H, Crichton DJ, Spira A, Liu G, Gower AC, Pass HI, Goparaju C, Dubinett SM, Krysan K, Stass SA, Kukuruga D, Van Keuren-Jensen K, Courtright-Lim A, Thompson KL, Rosenzweig BA, Sorbara L, Srivastava S, Salit ML. Pine PS, et al. Among authors: crichton dj. BMC Genomics. 2018 Mar 6;19(1):180. doi: 10.1186/s12864-018-4496-1. BMC Genomics. 2018. PMID: 29510677 Free PMC article.
Cancer Biomarkers and Big Data: A Planetary Science Approach.
Crichton DJ, Altinok A, Amos CI, Anton K, Cinquini L, Colbert M, Feng Z, Goel A, Kelly S, Kincaid H, Liu D, Lombeyda S, Mahabal A, Mishra A, Patriotis C, Srivastava S. Crichton DJ, et al. Cancer Cell. 2020 Dec 14;38(6):757-760. doi: 10.1016/j.ccell.2020.09.006. Epub 2020 Sep 24. Cancer Cell. 2020. PMID: 32976775 Free article.
Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.
Wu TJ, Schriml LM, Chen QR, Colbert M, Crichton DJ, Finney R, Hu Y, Kibbe WA, Kincaid H, Meerzaman D, Mitraka E, Pan Y, Smith KM, Srivastava S, Ward S, Yan C, Mazumder R. Wu TJ, et al. Among authors: crichton dj. Database (Oxford). 2015 Apr 4;2015:bav032. doi: 10.1093/database/bav032. Print 2015. Database (Oxford). 2015. PMID: 25841438 Free PMC article.
Cancer-secreted AGR2 induces programmed cell death in normal cells.
Vitello EA, Quek SI, Kincaid H, Fuchs T, Crichton DJ, Troisch P, Liu AY. Vitello EA, et al. Among authors: crichton dj. Oncotarget. 2016 Aug 2;7(31):49425-49434. doi: 10.18632/oncotarget.9921. Oncotarget. 2016. PMID: 27283903 Free PMC article.
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.
Rozenblatt-Rosen O, Regev A, Oberdoerffer P, Nawy T, Hupalowska A, Rood JE, Ashenberg O, Cerami E, Coffey RJ, Demir E, Ding L, Esplin ED, Ford JM, Goecks J, Ghosh S, Gray JW, Guinney J, Hanlon SE, Hughes SK, Hwang ES, Iacobuzio-Donahue CA, Jané-Valbuena J, Johnson BE, Lau KS, Lively T, Mazzilli SA, Pe'er D, Santagata S, Shalek AK, Schapiro D, Snyder MP, Sorger PK, Spira AE, Srivastava S, Tan K, West RB, Williams EH; Human Tumor Atlas Network. Rozenblatt-Rosen O, et al. Cell. 2020 Apr 16;181(2):236-249. doi: 10.1016/j.cell.2020.03.053. Cell. 2020. PMID: 32302568 Free PMC article. Review.
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data.
Dingerdissen HM, Bastian F, Vijay-Shanker K, Robinson-Rechavi M, Bell A, Gogate N, Gupta S, Holmes E, Kahsay R, Keeney J, Kincaid H, King CH, Liu D, Crichton DJ, Mazumder R. Dingerdissen HM, et al. Among authors: crichton dj. JCO Clin Cancer Inform. 2020 Mar;4:210-220. doi: 10.1200/CCI.19.00117. JCO Clin Cancer Inform. 2020. PMID: 32142370 Free PMC article.
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