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EUCALYPT: efficient tree reconciliation enumerator.
Donati B, Baudet C, Sinaimeri B, Crescenzi P, Sagot MF. Donati B, et al. Among authors: crescenzi p. Algorithms Mol Biol. 2015 Jan 23;10(1):3. doi: 10.1186/s13015-014-0031-3. eCollection 2015. Algorithms Mol Biol. 2015. PMID: 25648467 Free PMC article.
Cophylogeny reconstruction via an approximate Bayesian computation.
Baudet C, Donati B, Sinaimeri B, Crescenzi P, Gautier C, Matias C, Sagot MF. Baudet C, et al. Among authors: crescenzi p. Syst Biol. 2015 May;64(3):416-31. doi: 10.1093/sysbio/syu129. Epub 2014 Dec 24. Syst Biol. 2015. PMID: 25540454 Free PMC article.
MeDuSa: a multi-draft based scaffolder.
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M. Bosi E, et al. Among authors: crescenzi p. Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25. Bioinformatics. 2015. PMID: 25810435
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Milreu PV, Klein CC, Cottret L, Acuña V, Birmelé E, Borassi M, Junot C, Marchetti-Spaccamela A, Marino A, Stougie L, Jourdan F, Crescenzi P, Lacroix V, Sagot MF. Milreu PV, et al. Among authors: crescenzi p. Bioinformatics. 2014 Jan 1;30(1):61-70. doi: 10.1093/bioinformatics/btt597. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167155 Free PMC article.
On the complexity of protein folding.
Crescenzi P, Goldman D, Papadimitriou C, Piccolboni A, Yannakakis M. Crescenzi P, et al. J Comput Biol. 1998 Fall;5(3):423-65. doi: 10.1089/cmb.1998.5.423. J Comput Biol. 1998. PMID: 9773342