Costello Z - Search Results

1

Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer.

Denby CM, Li RA, Vu VT, Costello Z, Lin W, Chan LJG, Williams J, Donaldson B, Bamforth CW, Petzold CJ, Scheller HV, Martin HG, Keasling JD. Denby CM, et al. Among authors: costello z. Nat Commun. 2018 Mar 20;9(1):965. doi: 10.1038/s41467-018-03293-x. Nat Commun. 2018. PMID: 29559655 Free PMC article.

2

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism.

Zhang J, Petersen SD, Radivojevic T, Ramirez A, Pérez-Manríquez A, Abeliuk E, Sánchez BJ, Costello Z, Chen Y, Fero MJ, Martin HG, Nielsen J, Keasling JD, Jensen MK. Zhang J, et al. Among authors: costello z. Nat Commun. 2020 Sep 25;11(1):4880. doi: 10.1038/s41467-020-17910-1. Nat Commun. 2020. PMID: 32978375 Free PMC article.

3

A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.

Costello Z, Martin HG. Costello Z, et al. NPJ Syst Biol Appl. 2018 May 29;4:19. doi: 10.1038/s41540-018-0054-3. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29872542 Free PMC article.

4

Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from Pseudomonas putida.

Thompson MG, Pearson AN, Barajas JF, Cruz-Morales P, Sedaghatian N, Costello Z, Garber ME, Incha MR, Valencia LE, Baidoo EEK, Martin HG, Mukhopadhyay A, Keasling JD. Thompson MG, et al. Among authors: costello z. ACS Synth Biol. 2020 Jan 17;9(1):53-62. doi: 10.1021/acssynbio.9b00292. Epub 2020 Jan 2. ACS Synth Biol. 2020. PMID: 31841635

5

Investigation of Bar-seq as a method to study population dynamics of Saccharomyces cerevisiae deletion library during bioreactor cultivation.

Wehrs M, Thompson MG, Banerjee D, Prahl JP, Morella NM, Barcelos CA, Moon J, Costello Z, Keasling JD, Shih PM, Tanjore D, Mukhopadhyay A. Wehrs M, et al. Among authors: costello z. Microb Cell Fact. 2020 Aug 18;19(1):167. doi: 10.1186/s12934-020-01423-z. Microb Cell Fact. 2020. PMID: 32811554 Free PMC article.

6

The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.

Morrell WC, Birkel GW, Forrer M, Lopez T, Backman TWH, Dussault M, Petzold CJ, Baidoo EEK, Costello Z, Ando D, Alonso-Gutierrez J, George KW, Mukhopadhyay A, Vaino I, Keasling JD, Adams PD, Hillson NJ, Garcia Martin H. Morrell WC, et al. Among authors: costello z. ACS Synth Biol. 2017 Dec 15;6(12):2248-2259. doi: 10.1021/acssynbio.7b00204. Epub 2017 Sep 8. ACS Synth Biol. 2017. PMID: 28826210 Free article.

7

Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning.

Opgenorth P, Costello Z, Okada T, Goyal G, Chen Y, Gin J, Benites V, de Raad M, Northen TR, Deng K, Deutsch S, Baidoo EEK, Petzold CJ, Hillson NJ, Garcia Martin H, Beller HR. Opgenorth P, et al. Among authors: costello z. ACS Synth Biol. 2019 Jun 21;8(6):1337-1351. doi: 10.1021/acssynbio.9b00020. Epub 2019 May 24. ACS Synth Biol. 2019. PMID: 31072100 Free article.

8

Automated "Cells-To-Peptides" Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes.

Chen Y, Guenther JM, Gin JW, Chan LJG, Costello Z, Ogorzalek TL, Tran HM, Blake-Hedges JM, Keasling JD, Adams PD, García Martín H, Hillson NJ, Petzold CJ. Chen Y, et al. Among authors: costello z. J Proteome Res. 2019 Oct 4;18(10):3752-3761. doi: 10.1021/acs.jproteome.9b00455. Epub 2019 Aug 30. J Proteome Res. 2019. PMID: 31436101

9

A machine learning Automated Recommendation Tool for synthetic biology.

Radivojević T, Costello Z, Workman K, Garcia Martin H. Radivojević T, et al. Among authors: costello z. Nat Commun. 2020 Sep 25;11(1):4879. doi: 10.1038/s41467-020-18008-4. Nat Commun. 2020. PMID: 32978379 Free PMC article.

10

Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l-Lysine Metabolism.

Thompson MG, Costello Z, Hummel NFC, Cruz-Morales P, Blake-Hedges JM, Krishna RN, Skyrud W, Pearson AN, Incha MR, Shih PM, Garcia-Martin H, Keasling JD. Thompson MG, et al. Among authors: costello z. ACS Synth Biol. 2019 Oct 18;8(10):2385-2396. doi: 10.1021/acssynbio.9b00255. Epub 2019 Sep 25. ACS Synth Biol. 2019. PMID: 31518500

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