Costa RS - Search Results

1

Kinetic modeling of cell metabolism for microbial production.

Costa RS, Hartmann A, Vinga S. Costa RS, et al. J Biotechnol. 2016 Feb 10;219:126-41. doi: 10.1016/j.jbiotec.2015.12.023. Epub 2015 Dec 24. J Biotechnol. 2016. PMID: 26724578 Review.

2

An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2,3-butanediol production.

Costa RS, Hartmann A, Gaspar P, Neves AR, Vinga S. Costa RS, et al. Mol Biosyst. 2014 Mar 4;10(3):628-39. doi: 10.1039/c3mb70265k. Epub 2014 Jan 13. Mol Biosyst. 2014. PMID: 24413179

3

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.

Costa RS, Veríssimo A, Vinga S. Costa RS, et al. BMC Syst Biol. 2014 Aug 13;8:85. doi: 10.1186/s12918-014-0085-3. BMC Syst Biol. 2014. PMID: 25115331 Free PMC article.

4

Assessing Escherichia coli metabolism models and simulation approaches in phenotype predictions: Validation against experimental data.

Costa RS, Vinga S. Costa RS, et al. Biotechnol Prog. 2018 Nov;34(6):1344-1354. doi: 10.1002/btpr.2700. Epub 2018 Oct 9. Biotechnol Prog. 2018. PMID: 30294889

5

KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.

Mochão H, Barahona P, Costa RS. Mochão H, et al. Among authors: costa rs. Database (Oxford). 2020 Nov 28;2020:baaa093. doi: 10.1093/database/baaa093. Database (Oxford). 2020. PMID: 33247931 Free PMC article.

6

Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions.

Patrício A, Lopes MB, Costa PR, Costa RS, Henriques R, Vinga S. Patrício A, et al. Among authors: costa rs, costa pr. Toxins (Basel). 2022 Sep 30;14(10):679. doi: 10.3390/toxins14100679. Toxins (Basel). 2022. PMID: 36287948 Free PMC article.

7

Predicting metabolic fluxes from omics data via machine learning: Moving from knowledge-driven towards data-driven approaches.

Gonçalves DM, Henriques R, Costa RS. Gonçalves DM, et al. Among authors: costa rs. Comput Struct Biotechnol J. 2023 Oct 5;21:4960-4973. doi: 10.1016/j.csbj.2023.10.002. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37876626 Free PMC article.

8

SBML2HYB: a Python interface for SBML compatible hybrid modeling.

Pinto J, Costa RS, Alexandre L, Ramos J, Oliveira R. Pinto J, et al. Among authors: costa rs. Bioinformatics. 2023 Jan 1;39(1):btad044. doi: 10.1093/bioinformatics/btad044. Bioinformatics. 2023. PMID: 36661327 Free PMC article.

9

DISA tool: Discriminative and informative subspace assessment with categorical and numerical outcomes.

Alexandre L, Costa RS, Henriques R. Alexandre L, et al. Among authors: costa rs. PLoS One. 2022 Oct 19;17(10):e0276253. doi: 10.1371/journal.pone.0276253. eCollection 2022. PLoS One. 2022. PMID: 36260602 Free PMC article.

10

The relevance of enzyme specificity for coenzymes and the presence of 6-phosphogluconate dehydrogenase for polyhydroxyalkanoates production in the metabolism of Pseudomonas sp. LFM046.

Cardinali-Rezende J, Di Genova A, Nahat RATPS, Steinbüchel A, Sagot MF, Costa RS, Oliveira HC, Taciro MK, Silva LF, Gomez JGC. Cardinali-Rezende J, et al. Among authors: costa rs. Int J Biol Macromol. 2020 Nov 15;163:240-250. doi: 10.1016/j.ijbiomac.2020.06.226. Epub 2020 Jul 3. Int J Biol Macromol. 2020. PMID: 32622773

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