Costa IG - Search Results

1

Deep learning-based clustering approaches for bioinformatics.

Karim MR, Beyan O, Zappa A, Costa IG, Rebholz-Schuhmann D, Cochez M, Decker S. Karim MR, et al. Among authors: costa ig. Brief Bioinform. 2021 Jan 18;22(1):393-415. doi: 10.1093/bib/bbz170. Brief Bioinform. 2021. PMID: 32008043 Free PMC article. Review.

2

Clustering cancer gene expression data: a comparative study.

de Souto MC, Costa IG, de Araujo DS, Ludermir TB, Schliep A. de Souto MC, et al. Among authors: costa ig. BMC Bioinformatics. 2008 Nov 27;9:497. doi: 10.1186/1471-2105-9-497. BMC Bioinformatics. 2008. PMID: 19038021 Free PMC article.

3

Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis.

Jaskowiak PA, Campello RJ, Costa IG. Jaskowiak PA, et al. Among authors: costa ig. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):845-57. doi: 10.1109/TCBB.2013.9. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24334380

4

Impact of missing data imputation methods on gene expression clustering and classification.

de Souto MC, Jaskowiak PA, Costa IG. de Souto MC, et al. Among authors: costa ig. BMC Bioinformatics. 2015 Feb 26;16:64. doi: 10.1186/s12859-015-0494-3. BMC Bioinformatics. 2015. PMID: 25888091 Free PMC article.

5

A Drug-Target Network-Based Supervised Machine Learning Repurposing Method Allowing the Use of Multiple Heterogeneous Information Sources.

Nascimento ACA, Prudêncio RBC, Costa IG. Nascimento ACA, et al. Among authors: costa ig. Methods Mol Biol. 2019;1903:281-289. doi: 10.1007/978-1-4939-8955-3_17. Methods Mol Biol. 2019. PMID: 30547449

6

Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data.

Costa IG, Krause R, Opitz L, Schliep A. Costa IG, et al. BMC Bioinformatics. 2007;8 Suppl 10(Suppl 10):S3. doi: 10.1186/1471-2105-8-S10-S3. BMC Bioinformatics. 2007. PMID: 18269697 Free PMC article.

7

PyMix--the python mixture package--a tool for clustering of heterogeneous biological data.

Georgi B, Costa IG, Schliep A. Georgi B, et al. Among authors: costa ig. BMC Bioinformatics. 2010 Jan 6;11:9. doi: 10.1186/1471-2105-11-9. BMC Bioinformatics. 2010. PMID: 20053276 Free PMC article.

8

A multiple kernel learning algorithm for drug-target interaction prediction.

Nascimento AC, Prudêncio RB, Costa IG. Nascimento AC, et al. Among authors: costa ig. BMC Bioinformatics. 2016 Jan 22;17:46. doi: 10.1186/s12859-016-0890-3. BMC Bioinformatics. 2016. PMID: 26801218 Free PMC article.

9

Clustering of RNA-Seq samples: Comparison study on cancer data.

Jaskowiak PA, Costa IG, Campello RJGB. Jaskowiak PA, et al. Among authors: costa ig. Methods. 2018 Jan 1;132:42-49. doi: 10.1016/j.ymeth.2017.07.023. Epub 2017 Aug 2. Methods. 2018. PMID: 28778489

10

MOJITOO: a fast and universal method for integration of multimodal single-cell data.

Cheng M, Li Z, Costa IG. Cheng M, et al. Among authors: costa ig. Bioinformatics. 2022 Jun 24;38(Suppl 1):i282-i289. doi: 10.1093/bioinformatics/btac220. Bioinformatics. 2022. PMID: 35758807 Free PMC article.

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