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Protein degradation by human 20S proteasomes elucidates the interplay between peptide hydrolysis and splicing.
Nat Commun. 2024 Feb 7;15(1):1147. doi: 10.1038/s41467-024-45339-3.
Nat Commun. 2024.
PMID: 38326304
Free PMC article.
InvitroSPI and a large database of proteasome-generated spliced and non-spliced peptides.
Roetschke HP, Rodriguez-Hernandez G, Cormican JA, Yang X, Lynham S, Mishto M, Liepe J.
Roetschke HP, et al. Among authors: cormican ja.
Sci Data. 2023 Jan 10;10(1):18. doi: 10.1038/s41597-022-01890-6.
Sci Data. 2023.
PMID: 36627305
Free PMC article.
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iBench: A ground truth approach for advanced validation of mass spectrometry identification method.
Cormican JA, Soh WT, Mishto M, Liepe J.
Cormican JA, et al.
Proteomics. 2023 Jan;23(2):e2200271. doi: 10.1002/pmic.202200271. Epub 2022 Oct 17.
Proteomics. 2023.
PMID: 36189881
Free PMC article.
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inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction.
Cormican JA, Horokhovskyi Y, Soh WT, Mishto M, Liepe J.
Cormican JA, et al.
Mol Cell Proteomics. 2022 Dec;21(12):100432. doi: 10.1016/j.mcpro.2022.100432. Epub 2022 Oct 21.
Mol Cell Proteomics. 2022.
PMID: 36280141
Free PMC article.
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Database search engines and target database features impinge upon the identification of post-translationally cis-spliced peptides in HLA class I immunopeptidomes.
Mishto M, Horokhovskyi Y, Cormican JA, Yang X, Lynham S, Urlaub H, Liepe J.
Mishto M, et al. Among authors: cormican ja.
Proteomics. 2022 May;22(10):e2100226. doi: 10.1002/pmic.202100226. Epub 2022 Mar 3.
Proteomics. 2022.
PMID: 35184383
Free PMC article.
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