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aaHash: recursive amino acid sequence hashing.
Wong J, Kazemi P, Coombe L, Warren RL, Birol I. Wong J, et al. Among authors: coombe l. Bioinform Adv. 2023 Nov 11;3(1):vbad162. doi: 10.1093/bioadv/vbad162. eCollection 2023. Bioinform Adv. 2023. PMID: 38023332 Free PMC article.
Tigmint: correcting assembly errors using linked reads from large molecules.
Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I. Jackman SD, et al. Among authors: coombe l. BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6. BMC Bioinformatics. 2018. PMID: 30367597 Free PMC article.
ntEdit: scalable genome sequence polishing.
Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I. Warren RL, et al. Among authors: coombe l. Bioinformatics. 2019 Nov 1;35(21):4430-4432. doi: 10.1093/bioinformatics/btz400. Bioinformatics. 2019. PMID: 31095290 Free PMC article.
RResolver: efficient short-read repeat resolution within ABySS.
Nikolić V, Afshinfard A, Chu J, Wong J, Coombe L, Nip KM, Warren RL, Birol I. Nikolić V, et al. Among authors: coombe l. BMC Bioinformatics. 2022 Jun 21;23(1):246. doi: 10.1186/s12859-022-04790-z. BMC Bioinformatics. 2022. PMID: 35729491 Free PMC article.
39 results