Coolen JPM - Search Results

1

External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories.

Wegner F, Roloff T, Huber M, Cordey S, Ramette A, Gerth Y, Bertelli C, Stange M, Seth-Smith HMB, Mari A, Leuzinger K, Cerutti L, Harshman K, Xenarios I, Le Mercier P, Bittel P, Neuenschwander S, Opota O, Fuchs J, Panning M, Michel C, Hallin M, Demuyser T, De Mendonca R, Savelkoul P, Dingemans J, van der Veer B, Boers SA, Claas ECJ, Coolen JPM, Melchers WJG, Gunell M, Kallonen T, Vuorinen T, Hakanen AJ, Bernhoff E, Hetland MAK, Golan Berman H, Adar S, Moran-Gilad J, Wolf DG, Leib SL, Nolte O, Kaiser L, Schmutz S, Kufner V, Zaheri M, Trkola A, Aamot HV, Hirsch HH, Greub G, Egli A. Wegner F, et al. Among authors: coolen jpm. J Clin Microbiol. 2022 Jan 19;60(1):e0169821. doi: 10.1128/JCM.01698-21. Epub 2021 Nov 10. J Clin Microbiol. 2022. PMID: 34757834 Free PMC article.

2

Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis.

Quainoo S, Coolen JPM, van Hijum SAFT, Huynen MA, Melchers WJG, van Schaik W, Wertheim HFL. Quainoo S, et al. Among authors: coolen jpm. Clin Microbiol Rev. 2017 Oct;30(4):1015-1063. doi: 10.1128/CMR.00016-17. Clin Microbiol Rev. 2017. PMID: 28855266 Free PMC article. Review.

3

Correction for Quainoo et al., "Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis".

Quainoo S, Coolen JPM, van Hijum SAFT, Huynen MA, Melchers WJG, van Schaik W, Wertheim HFL. Quainoo S, et al. Among authors: coolen jpm. Clin Microbiol Rev. 2017 Nov 1;31(1):e00082-17. doi: 10.1128/CMR.00082-17. Print 2018 Jan. Clin Microbiol Rev. 2017. PMID: 29092893 Free PMC article. No abstract available.

4

Gene co-expression analysis identifies gene clusters associated with isotropic and polarized growth in Aspergillus fumigatus conidia.

Baltussen TJH, Coolen JPM, Zoll J, Verweij PE, Melchers WJG. Baltussen TJH, et al. Among authors: coolen jpm. Fungal Genet Biol. 2018 Jul;116:62-72. doi: 10.1016/j.fgb.2018.04.013. Epub 2018 Apr 26. Fungal Genet Biol. 2018. PMID: 29705402 Free article.

5

Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole.

Hokken MWJ, Zoll J, Coolen JPM, Zwaan BJ, Verweij PE, Melchers WJG. Hokken MWJ, et al. Among authors: coolen jpm. BMC Genomics. 2019 Jan 9;20(1):28. doi: 10.1186/s12864-018-5255-z. BMC Genomics. 2019. PMID: 30626317 Free PMC article.

6

Genome-wide analysis in Escherichia coli unravels a high level of genetic homoplasy associated with cefotaxime resistance.

Coolen JPM, den Drijver EPM, Verweij JJ, Schildkraut JA, Neveling K, Melchers WJG, Kolwijck E, Wertheim HFL, Kluytmans JAJW, Huynen MA. Coolen JPM, et al. Microb Genom. 2021 Apr;7(4):000556. doi: 10.1099/mgen.0.000556. Microb Genom. 2021. PMID: 33843573 Free PMC article.

7

Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics.

Baltussen TJH, Coolen JPM, Verweij PE, Dijksterhuis J, Melchers WJG. Baltussen TJH, et al. Among authors: coolen jpm. J Fungi (Basel). 2021 Apr 1;7(4):270. doi: 10.3390/jof7040270. J Fungi (Basel). 2021. PMID: 33916245 Free PMC article.

8

Centre-specific bacterial pathogen typing affects infection-control decision making.

Coolen JPM, Jamin C, Savelkoul PHM, Rossen JWA, Wertheim HFL, Matamoros SP, van Alphen LB, On Behalf Of Sig Bioinformatics In Medical Microbiology Nl Consortium. Coolen JPM, et al. Microb Genom. 2021 Aug;7(8):000612. doi: 10.1099/mgen.0.000612. Microb Genom. 2021. PMID: 34356004 Free PMC article.

9

SARS-CoV-2 whole-genome sequencing using reverse complement PCR: For easy, fast and accurate outbreak and variant analysis.

Coolen JPM, Wolters F, Tostmann A, van Groningen LFJ, Bleeker-Rovers CP, Tan ECTH, van der Geest-Blankert N, Hautvast JLA, Hopman J, Wertheim HFL, Rahamat-Langendoen JC, Storch M, Melchers WJG. Coolen JPM, et al. J Clin Virol. 2021 Nov;144:104993. doi: 10.1016/j.jcv.2021.104993. Epub 2021 Oct 2. J Clin Virol. 2021. PMID: 34619382 Free PMC article.

10

MGIT Enriched Shotgun Metagenomics for Routine Identification of Nontuberculous Mycobacteria: a Route to Personalized Health Care.

Schildkraut JA, Coolen JPM, Severin H, Koenraad E, Aalders N, Melchers WJG, Hoefsloot W, Wertheim HFL, van Ingen J. Schildkraut JA, et al. Among authors: coolen jpm. J Clin Microbiol. 2023 Mar 23;61(3):e0131822. doi: 10.1128/jcm.01318-22. Epub 2023 Feb 22. J Clin Microbiol. 2023. PMID: 36840602 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

31 results

Search Page