Conesa A - Search Results

1

Independent phenotypic plasticity axes define distinct obesity sub-types.

Yang CH, Fagnocchi L, Apostle S, Wegert V, Casaní-Galdón S, Landgraf K, Panzeri I, Dror E, Heyne S, Wörpel T, Chandler DP, Lu D, Yang T, Gibbons E, Guerreiro R, Bras J, Thomasen M, Grunnet LG, Vaag AA, Gillberg L, Grundberg E, Conesa A, Körner A; PERMUTE; Pospisilik JA. Yang CH, et al. Among authors: conesa a. Nat Metab. 2022 Sep;4(9):1150-1165. doi: 10.1038/s42255-022-00629-2. Epub 2022 Sep 12. Nat Metab. 2022. PMID: 36097183 Free PMC article.

2

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach.

Sánchez-Gaya V, Casaní-Galdón S, Ugidos M, Kuang Z, Mellor J, Conesa A, Tarazona S. Sánchez-Gaya V, et al. Among authors: conesa a. Front Genet. 2018 Nov 30;9:578. doi: 10.3389/fgene.2018.00578. eCollection 2018. Front Genet. 2018. PMID: 30555512 Free PMC article.

3

Padhoc: a computational pipeline for pathway reconstruction on the fly.

Casaní-Galdón S, Pereira C, Conesa A. Casaní-Galdón S, et al. Among authors: conesa a. Bioinformatics. 2020 Dec 30;36(Suppl_2):i795-i803. doi: 10.1093/bioinformatics/btaa811. Bioinformatics. 2020. PMID: 33381819

4

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.

Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A. Pardo-Palacios FJ, et al. Among authors: conesa a. Nat Methods. 2024 May;21(5):793-797. doi: 10.1038/s41592-024-02229-2. Epub 2024 Mar 20. Nat Methods. 2024. PMID: 38509328 Free PMC article.

5

acorde unravels functionally interpretable networks of isoform co-usage from single cell data.

Arzalluz-Luque A, Salguero P, Tarazona S, Conesa A. Arzalluz-Luque A, et al. Among authors: conesa a. Nat Commun. 2022 Apr 5;13(1):1828. doi: 10.1038/s41467-022-29497-w. Nat Commun. 2022. PMID: 35383181 Free PMC article.

6

Undisclosed, unmet and neglected challenges in multi-omics studies.

Tarazona S, Arzalluz-Luque A, Conesa A. Tarazona S, et al. Among authors: conesa a. Nat Comput Sci. 2021 Jun;1(6):395-402. doi: 10.1038/s43588-021-00086-z. Epub 2021 Jun 21. Nat Comput Sci. 2021. PMID: 38217236 Review.

7

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.

García-Alcalde F, García-López F, Dopazo J, Conesa A. García-Alcalde F, et al. Among authors: conesa a. Bioinformatics. 2011 Jan 1;27(1):137-9. doi: 10.1093/bioinformatics/btq594. Epub 2010 Nov 23. Bioinformatics. 2011. PMID: 21098431 Free PMC article.

8

B2G-FAR, a species-centered GO annotation repository.

Götz S, Arnold R, Sebastián-León P, Martín-Rodríguez S, Tischler P, Jehl MA, Dopazo J, Rattei T, Conesa A. Götz S, et al. Among authors: conesa a. Bioinformatics. 2011 Apr 1;27(7):919-24. doi: 10.1093/bioinformatics/btr059. Epub 2011 Feb 18. Bioinformatics. 2011. PMID: 21335611 Free PMC article.

9

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Okonechnikov K, Conesa A, García-Alcalde F. Okonechnikov K, et al. Among authors: conesa a. Bioinformatics. 2016 Jan 15;32(2):292-4. doi: 10.1093/bioinformatics/btv566. Epub 2015 Oct 1. Bioinformatics. 2016. PMID: 26428292 Free PMC article.

10

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Zhu Q, Li X, Conesa A, Pereira C. Zhu Q, et al. Among authors: conesa a. Bioinformatics. 2018 May 1;34(9):1547-1554. doi: 10.1093/bioinformatics/btx815. Bioinformatics. 2018. PMID: 29272325 Free PMC article.

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