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STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse.
Gomez-Cabrero D, Tarazona S, Ferreirós-Vidal I, Ramirez RN, Company C, Schmidt A, Reijmers T, Paul VVS, Marabita F, Rodríguez-Ubreva J, Garcia-Gomez A, Carroll T, Cooper L, Liang Z, Dharmalingam G, van der Kloet F, Harms AC, Balzano-Nogueira L, Lagani V, Tsamardinos I, Lappe M, Maier D, Westerhuis JA, Hankemeier T, Imhof A, Ballestar E, Mortazavi A, Merkenschlager M, Tegner J, Conesa A. Gomez-Cabrero D, et al. Among authors: conesa a. Sci Data. 2019 Oct 31;6(1):256. doi: 10.1038/s41597-019-0202-7. Sci Data. 2019. PMID: 31672995 Free PMC article.
Differential expression in RNA-seq: a matter of depth.
Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A. Tarazona S, et al. Among authors: conesa a. Genome Res. 2011 Dec;21(12):2213-23. doi: 10.1101/gr.124321.111. Epub 2011 Sep 8. Genome Res. 2011. PMID: 21903743 Free PMC article.
Data integration in the era of omics: current and future challenges.
Gomez-Cabrero D, Abugessaisa I, Maier D, Teschendorff A, Merkenschlager M, Gisel A, Ballestar E, Bongcam-Rudloff E, Conesa A, Tegnér J. Gomez-Cabrero D, et al. Among authors: conesa a. BMC Syst Biol. 2014;8 Suppl 2(Suppl 2):I1. doi: 10.1186/1752-0509-8-S2-I1. Epub 2014 Mar 13. BMC Syst Biol. 2014. PMID: 25032990 Free PMC article. Review.
The common ground of genomics and systems biology.
Conesa A, Mortazavi A. Conesa A, et al. BMC Syst Biol. 2014;8 Suppl 2(Suppl 2):S1. doi: 10.1186/1752-0509-8-S2-S1. Epub 2014 Mar 13. BMC Syst Biol. 2014. PMID: 25033072 Free PMC article. Review.
Understanding disease mechanisms with models of signaling pathway activities.
Sebastian-Leon P, Vidal E, Minguez P, Conesa A, Tarazona S, Amadoz A, Armero C, Salavert F, Vidal-Puig A, Montaner D, Dopazo J. Sebastian-Leon P, et al. Among authors: conesa a. BMC Syst Biol. 2014 Oct 25;8:121. doi: 10.1186/s12918-014-0121-3. BMC Syst Biol. 2014. PMID: 25344409 Free PMC article.
A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Genome Biol. 2016 Jan 26;17:13. doi: 10.1186/s13059-016-0881-8. Genome Biol. 2016. PMID: 26813401 Free PMC article. Review.
239 results