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A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: collman f. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
Mapping synapses by conjugate light-electron array tomography.
Collman F, Buchanan J, Phend KD, Micheva KD, Weinberg RJ, Smith SJ. Collman F, et al. J Neurosci. 2015 Apr 8;35(14):5792-807. doi: 10.1523/JNEUROSCI.4274-14.2015. J Neurosci. 2015. PMID: 25855189 Free PMC article.
Knowing a synapse when you see one.
Burette A, Collman F, Micheva KD, Smith SJ, Weinberg RJ. Burette A, et al. Among authors: collman f. Front Neuroanat. 2015 Jul 28;9:100. doi: 10.3389/fnana.2015.00100. eCollection 2015. Front Neuroanat. 2015. PMID: 26283929 Free PMC article.
Probabilistic fluorescence-based synapse detection.
Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Simhal AK, et al. Among authors: collman f. PLoS Comput Biol. 2017 Apr 17;13(4):e1005493. doi: 10.1371/journal.pcbi.1005493. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28414801 Free PMC article.
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.
Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, Hawrylycz M. Smith SJ, et al. Among authors: collman f. Elife. 2019 Nov 11;8:e47889. doi: 10.7554/eLife.47889. Elife. 2019. PMID: 31710287 Free PMC article.
A scalable and modular automated pipeline for stitching of large electron microscopy datasets.
Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan J, Takeno MM, Yin W, Bumbarger DJ, Gwinn RP, Nyhus J, Lein E, Smith SJ, Reid RC, Khairy KA, Saalfeld S, Collman F, Macarico da Costa N. Mahalingam G, et al. Among authors: collman f. Elife. 2022 Jul 26;11:e76534. doi: 10.7554/eLife.76534. Elife. 2022. PMID: 35880860 Free PMC article.
Canonical genetic signatures of the adult human brain.
Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, Grange P, Berman KA, Mihalas S, Yao Z, Stewart L, Barabási AL, Schulkin J, Phillips J, Ng L, Dang C, Haynor DR, Jones A, Van Essen DC, Koch C, Lein E. Hawrylycz M, et al. Among authors: collman f. Nat Neurosci. 2015 Dec;18(12):1832-44. doi: 10.1038/nn.4171. Epub 2015 Nov 16. Nat Neurosci. 2015. PMID: 26571460 Free PMC article.
31 results