Coleman-Derr D - Search Results

1

Plant immunity suppression via PHR1-RALF-FERONIA shapes the root microbiome to alleviate phosphate starvation.

Tang J, Wu D, Li X, Wang L, Xu L, Zhang Y, Xu F, Liu H, Xie Q, Dai S, Coleman-Derr D, Zhu S, Yu F. Tang J, et al. Among authors: coleman derr d. EMBO J. 2022 Mar 15;41(6):e109102. doi: 10.15252/embj.2021109102. Epub 2022 Feb 11. EMBO J. 2022. PMID: 35146778 Free PMC article.

2

MetaCoMET: a web platform for discovery and visualization of the core microbiome.

Wang Y, Xu L, Gu YQ, Coleman-Derr D. Wang Y, et al. Bioinformatics. 2016 Nov 15;32(22):3469-3470. doi: 10.1093/bioinformatics/btw507. Epub 2016 Aug 2. Bioinformatics. 2016. PMID: 27485442

3

PIECE 2.0: an update for the plant gene structure comparison and evolution database.

Wang Y, Xu L, Thilmony R, You FM, Gu YQ, Coleman-Derr D. Wang Y, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):1015-1020. doi: 10.1093/nar/gkw935. Epub 2016 Oct 13. Nucleic Acids Res. 2017. PMID: 27742820 Free PMC article.

4

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria.

Xu L, Naylor D, Dong Z, Simmons T, Pierroz G, Hixson KK, Kim YM, Zink EM, Engbrecht KM, Wang Y, Gao C, DeGraaf S, Madera MA, Sievert JA, Hollingsworth J, Birdseye D, Scheller HV, Hutmacher R, Dahlberg J, Jansson C, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4284-E4293. doi: 10.1073/pnas.1717308115. Epub 2018 Apr 16. Proc Natl Acad Sci U S A. 2018. PMID: 29666229 Free PMC article.

5

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species.

Xu L, Dong Z, Fang L, Luo Y, Wei Z, Guo H, Zhang G, Gu YQ, Coleman-Derr D, Xia Q, Wang Y. Xu L, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W52-W58. doi: 10.1093/nar/gkz333. Nucleic Acids Res. 2019. PMID: 31053848 Free PMC article.

6

Causes and consequences of a conserved bacterial root microbiome response to drought stress.

Xu L, Coleman-Derr D. Xu L, et al. Curr Opin Microbiol. 2019 Jun;49:1-6. doi: 10.1016/j.mib.2019.07.003. Epub 2019 Aug 24. Curr Opin Microbiol. 2019. PMID: 31454709 Free article. Review.

7

Nematode-Encoded RALF Peptide Mimics Facilitate Parasitism of Plants through the FERONIA Receptor Kinase.

Zhang X, Peng H, Zhu S, Xing J, Li X, Zhu Z, Zheng J, Wang L, Wang B, Chen J, Ming Z, Yao K, Jian J, Luan S, Coleman-Derr D, Liao H, Peng Y, Peng D, Yu F. Zhang X, et al. Mol Plant. 2020 Oct 5;13(10):1434-1454. doi: 10.1016/j.molp.2020.08.014. Epub 2020 Sep 4. Mol Plant. 2020. PMID: 32896643 Free article.

8

Agricultural Soil Management Practices Differentially Shape the Bacterial and Fungal Microbiome of Sorghum bicolor.

Wipf HM, Xu L, Gao C, Spinner HB, Taylor J, Lemaux P, Mitchell J, Coleman-Derr D. Wipf HM, et al. Appl Environ Microbiol. 2021 Mar 1;87(5):e02345-20. doi: 10.1128/AEM.02345-20. Epub 2020 Dec 11. Appl Environ Microbiol. 2021. PMID: 33310712 Free PMC article.

9

Holo-omics for deciphering plant-microbiome interactions.

Xu L, Pierroz G, Wipf HM, Gao C, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Microbiome. 2021 Mar 24;9(1):69. doi: 10.1186/s40168-021-01014-z. Microbiome. 2021. PMID: 33762001 Free PMC article. Review.

10

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.

Xu L, Dong Z, Chiniquy D, Pierroz G, Deng S, Gao C, Diamond S, Simmons T, Wipf HM, Caddell D, Varoquaux N, Madera MA, Hutmacher R, Deutschbauer A, Dahlberg JA, Guerinot ML, Purdom E, Banfield JF, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Nat Commun. 2021 May 28;12(1):3209. doi: 10.1038/s41467-021-23553-7. Nat Commun. 2021. PMID: 34050180 Free PMC article.

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