Cole J - Search Results

1

Alterations in the Endophyte-Enriched Root-Associated Microbiome of Rice Receiving Growth-Promoting Treatments of Urea Fertilizer and Rhizobium Biofertilizer.

Jha PN, Gomaa AB, Yanni YG, El-Saadany AY, Stedtfeld TM, Stedtfeld RD, Gantner S, Chai B, Cole J, Hashsham SA, Dazzo FB. Jha PN, et al. Among authors: cole j. Microb Ecol. 2020 Feb;79(2):367-382. doi: 10.1007/s00248-019-01406-7. Epub 2019 Jul 25. Microb Ecol. 2020. PMID: 31346687

2

Assessment of virulence-factor activity relationships (VFARs) for waterborne diseases.

Jenkins TM, Scott TM, Cole JR, Hashsham SA, Rose JB. Jenkins TM, et al. Among authors: cole jr. Water Sci Technol. 2004;50(1):309-14. Water Sci Technol. 2004. PMID: 15318527

3

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM. Cole JR, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D294-6. doi: 10.1093/nar/gki038. Nucleic Acids Res. 2005. PMID: 15608200 Free PMC article.

4

Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays.

Stedtfeld RD, Wick LM, Baushke SW, Tourlousse DM, Herzog AB, Xia Y, Rouillard JM, Klappenbach JA, Cole JR, Gulari E, Tiedje JM, Hashsham SA. Stedtfeld RD, et al. Appl Environ Microbiol. 2007 Jan;73(2):380-9. doi: 10.1128/AEM.01785-06. Epub 2006 Nov 17. Appl Environ Microbiol. 2007. PMID: 17114322 Free PMC article.

5

Multiplex approach for screening genetic markers of microbial indicators.

Stedtfeld RD, Baushke S, Tourlousse D, Chai B, Cole JR, Hashsham SA. Stedtfeld RD, et al. Water Environ Res. 2007 Mar;79(3):260-9. doi: 10.2175/106143007x181378. Water Environ Res. 2007. PMID: 17469657

6

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. Cole JR, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879. Epub 2008 Nov 12. Nucleic Acids Res. 2009. PMID: 19004872 Free PMC article.

7

Worldwide prevalence of class 2 integrases outside the clinical setting is associated with human impact.

Rodríguez-Minguela CM, Apajalahti JH, Chai B, Cole JR, Tiedje JM. Rodríguez-Minguela CM, et al. Appl Environ Microbiol. 2009 Aug;75(15):5100-10. doi: 10.1128/AEM.00133-09. Epub 2009 Jun 5. Appl Environ Microbiol. 2009. PMID: 19502434 Free PMC article.

8

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment.

Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. Iwai S, et al. ISME J. 2010 Feb;4(2):279-85. doi: 10.1038/ismej.2009.104. Epub 2009 Sep 24. ISME J. 2010. PMID: 19776767 Free PMC article.

9

In-feed antibiotic effects on the swine intestinal microbiome.

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB. Looft T, et al. Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1691-6. doi: 10.1073/pnas.1120238109. Epub 2012 Jan 17. Proc Natl Acad Sci U S A. 2012. PMID: 22307632 Free PMC article.

10

FunGene: the functional gene pipeline and repository.

Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. Fish JA, et al. Front Microbiol. 2013 Oct 1;4:291. doi: 10.3389/fmicb.2013.00291. eCollection 2013. Front Microbiol. 2013. PMID: 24101916 Free PMC article.

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