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The ecoresponsive genome of Daphnia pulex.
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. Colbourne JK, et al. Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761. Science. 2011. PMID: 21292972 Free PMC article.
Genomics in the ecological arena.
Orsini L, Decaestecker E, De Meester L, Pfrender ME, Colbourne JK. Orsini L, et al. Among authors: colbourne jk. Biol Lett. 2011 Feb 23;7(1):2-3. doi: 10.1098/rsbl.2010.0629. Epub 2010 Aug 11. Biol Lett. 2011. PMID: 20702453 Free PMC article.
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.
Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ. Orsini L, et al. Among authors: colbourne jk. Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Sci Data. 2016. PMID: 27164179 Free PMC article.
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.
Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L. Orsini L, et al. Among authors: colbourne jk. Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19. Mol Ecol. 2018. PMID: 28746735 Free PMC article.
Recent advances in crustacean genomics.
Stillman JH, Colbourne JK, Lee CE, Patel NH, Phillips MR, Towle DW, Eads BD, Gelembuik GW, Henry RP, Johnson EA, Pfrender ME, Terwilliger NB. Stillman JH, et al. Among authors: colbourne jk. Integr Comp Biol. 2008 Dec;48(6):852-68. doi: 10.1093/icb/icn096. Epub 2008 Oct 30. Integr Comp Biol. 2008. PMID: 21669837
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