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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 1
2009 2
2010 5
2011 5
2012 3
2013 3
2014 2
2015 5
2016 17
2017 13
2018 15
2019 9
2020 10
2021 10
2022 7
2023 4
2024 5

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113 results

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Page 1
Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Riley R, Bowers RM, Camargo AP, Campbell A, Egan R, Eloe-Fadrosh EA, Foster B, Hofmeyr S, Huntemann M, Kellom M, Kimbrel JA, Oliker L, Yelick K, Pett-Ridge J, Salamov A, Varghese NJ, Clum A. Riley R, et al. Among authors: clum a. Microbiol Spectr. 2023 Aug 17;11(4):e0020023. doi: 10.1128/spectrum.00200-23. Epub 2023 Jun 13. Microbiol Spectr. 2023. PMID: 37310219 Free PMC article.
Genome Assembly.
Clum A. Clum A. Methods Mol Biol. 2018;1775:141-153. doi: 10.1007/978-1-4939-7804-5_13. Methods Mol Biol. 2018. PMID: 29876816
A single-cell genomics pipeline for environmental microbial eukaryotes.
Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, Barry K, Copeland A, Singer SW, Woyke T, Grigoriev IV, James TY, Cheng JF. Ciobanu D, et al. Among authors: clum a. iScience. 2021 Mar 10;24(4):102290. doi: 10.1016/j.isci.2021.102290. eCollection 2021 Apr 23. iScience. 2021. PMID: 33870123 Free PMC article.
DOE JGI Metagenome Workflow.
Clum A, Huntemann M, Bushnell B, Foster B, Foster B, Roux S, Hajek PP, Varghese N, Mukherjee S, Reddy TBK, Daum C, Yoshinaga Y, O'Malley R, Seshadri R, Kyrpides NC, Eloe-Fadrosh EA, Chen IA, Copeland A, Ivanova NN. Clum A, et al. mSystems. 2021 May 18;6(3):e00804-20. doi: 10.1128/mSystems.00804-20. mSystems. 2021. PMID: 34006627 Free PMC article.
A standardized quantitative analysis strategy for stable isotope probing metagenomics.
Vyshenska D, Sampara P, Singh K, Tomatsu A, Kauffman WB, Nuccio EE, Blazewicz SJ, Pett-Ridge J, Louie KB, Varghese N, Kellom M, Clum A, Riley R, Roux S, Eloe-Fadrosh EA, Ziels RM, Malmstrom RR. Vyshenska D, et al. Among authors: clum a. mSystems. 2023 Aug 31;8(4):e0128022. doi: 10.1128/msystems.01280-22. Epub 2023 Jun 28. mSystems. 2023. PMID: 37377419 Free PMC article.
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms.
Lebreton A, Tang N, Kuo A, LaButti K, Andreopoulos W, Drula E, Miyauchi S, Barry K, Clum A, Lipzen A, Mousain D, Ng V, Wang R, Dai Y, Henrissat B, Grigoriev IV, Guerin-Laguette A, Yu F, Martin FM. Lebreton A, et al. Among authors: clum a. New Phytol. 2022 Jul;235(1):306-319. doi: 10.1111/nph.18143. Epub 2022 Apr 28. New Phytol. 2022. PMID: 35383395 Free article.
A comparative genomics study of 23 Aspergillus species from section Flavi.
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: clum a. Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y. Nat Commun. 2020. PMID: 32107379 Free PMC article.
Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil.
Chuckran PF, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Ivanova NN, Kyrpides NC, Del Rio TG, Eloe-Fadrosh EA, Morrissey EM, Schwartz E, Fofanov V, Hungate B, Dijkstra P. Chuckran PF, et al. Among authors: clum a. Microbiol Resour Announc. 2020 Oct 29;9(44):e00895-20. doi: 10.1128/MRA.00895-20. Microbiol Resour Announc. 2020. PMID: 33122409 Free PMC article.
Terabase-scale metagenome coassembly with MetaHipMer.
Hofmeyr S, Egan R, Georganas E, Copeland AC, Riley R, Clum A, Eloe-Fadrosh E, Roux S, Goltsman E, Buluç A, Rokhsar D, Oliker L, Yelick K. Hofmeyr S, et al. Among authors: clum a. Sci Rep. 2020 Jul 1;10(1):10689. doi: 10.1038/s41598-020-67416-5. Sci Rep. 2020. PMID: 32612216 Free PMC article.
113 results