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ProDeGe: a computational protocol for fully automated decontamination of genomes.
Tennessen K, Andersen E, Clingenpeel S, Rinke C, Lundberg DS, Han J, Dangl JL, Ivanova N, Woyke T, Kyrpides N, Pati A. Tennessen K, et al. Among authors: clingenpeel s. ISME J. 2016 Jan;10(1):269-72. doi: 10.1038/ismej.2015.100. Epub 2015 Jun 9. ISME J. 2016. PMID: 26057843 Free PMC article.
Decontamination of MDA reagents for single cell whole genome amplification.
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF. Woyke T, et al. Among authors: clingenpeel s. PLoS One. 2011;6(10):e26161. doi: 10.1371/journal.pone.0026161. Epub 2011 Oct 20. PLoS One. 2011. PMID: 22028825 Free PMC article.
Yellowstone lake nanoarchaeota.
Clingenpeel S, Kan J, Macur RE, Woyke T, Lovalvo D, Varley J, Inskeep WP, Nealson K, McDermott TR. Clingenpeel S, et al. Front Microbiol. 2013 Sep 11;4:274. doi: 10.3389/fmicb.2013.00274. eCollection 2013. Front Microbiol. 2013. PMID: 24062731 Free PMC article.
Archaea in Yellowstone Lake.
Kan J, Clingenpeel S, Macur RE, Inskeep WP, Lovalvo D, Varley J, Gorby Y, McDermott TR, Nealson K. Kan J, et al. Among authors: clingenpeel s. ISME J. 2011 Nov;5(11):1784-95. doi: 10.1038/ismej.2011.56. Epub 2011 May 5. ISME J. 2011. PMID: 21544103 Free PMC article.
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.
Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA. Nurk S, et al. Among authors: clingenpeel sr. J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084. J Comput Biol. 2013. PMID: 24093227 Free PMC article.
Genomic features of bacterial adaptation to plants.
Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, McDonald M, Klein AP, Feltcher ME, Rio TG, Grant SR, Doty SL, Ley RE, Zhao B, Venturi V, Pelletier DA, Vorholt JA, Tringe SG, Woyke T, Dangl JL. Levy A, et al. Among authors: clingenpeel s. Nat Genet. 2017 Dec 18;50(1):138-150. doi: 10.1038/s41588-017-0012-9. Nat Genet. 2017. PMID: 29255260 Free PMC article.
21 results