Clement MJ - Search Results

1

The OGCleaner: filtering false-positive homology clusters.

Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Snell Q, Bybee SM. Fujimoto MS, et al. Among authors: clement mj. Bioinformatics. 2017 Jan 1;33(1):125-127. doi: 10.1093/bioinformatics/btw571. Epub 2016 Sep 10. Bioinformatics. 2017. PMID: 27614349

2

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction.

Bodily PM, Fujimoto MS, Snell Q, Ventura D, Clement MJ. Bodily PM, et al. Among authors: clement mj. Bioinformatics. 2016 Jan 1;32(1):17-24. doi: 10.1093/bioinformatics/btv548. Epub 2015 Sep 17. Bioinformatics. 2016. PMID: 26382194 Free PMC article.

3

Detecting false positive sequence homology: a machine learning approach.

Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Bybee SM. Fujimoto MS, et al. Among authors: clement mj. BMC Bioinformatics. 2016 Feb 24;17:101. doi: 10.1186/s12859-016-0955-3. BMC Bioinformatics. 2016. PMID: 26911862 Free PMC article.

4

DNA reference alignment benchmarks based on tertiary structure of encoded proteins.

Carroll H, Beckstead W, O'Connor T, Ebbert M, Clement M, Snell Q, McClellan D. Carroll H, et al. Bioinformatics. 2007 Oct 1;23(19):2648-9. doi: 10.1093/bioinformatics/btm389. Epub 2007 Aug 8. Bioinformatics. 2007. PMID: 17686799

5

Phylogenies scores for exhaustive searches and parsimony scores searches.

Carroll HD, Ridge PG, Clement MJ, Snell QO. Carroll HD, et al. Among authors: clement mj. Int J Bioinform Res Appl. 2007;3(4):493-503. doi: 10.1504/IJBRA.2007.015417. Int J Bioinform Res Appl. 2007. PMID: 18048315

6

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.

Clement NL, Snell Q, Clement MJ, Hollenhorst PC, Purwar J, Graves BJ, Cairns BR, Johnson WE. Clement NL, et al. Among authors: clement mj. Bioinformatics. 2010 Jan 1;26(1):38-45. doi: 10.1093/bioinformatics/btp614. Epub 2009 Oct 27. Bioinformatics. 2010. PMID: 19861355 Free PMC article.

7

Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata.

Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HM, Ogden TH, Clement MJ, Bybee SM. Suvorov A, et al. Among authors: clement mj. Mol Ecol. 2017 Mar;26(5):1306-1322. doi: 10.1111/mec.13884. Epub 2016 Nov 5. Mol Ecol. 2017. PMID: 27758014

8

Jumpstarting phylogenetic analysis.

Mecham J, Clement M, Snell Q, Freestone T, Seppi K, Crandall K. Mecham J, et al. Int J Bioinform Res Appl. 2006;2(1):19-35. doi: 10.1504/IJBRA.2006.009191. Int J Bioinform Res Appl. 2006. PMID: 18048151

9

An open source phylogenetic search and alignment package.

Carroll H, Teichert AR, Krein J, Sundberg K, Snell Q, Clement M. Carroll H, et al. Int J Bioinform Res Appl. 2009;5(3):349-64. doi: 10.1504/IJBRA.2009.026424. Int J Bioinform Res Appl. 2009. PMID: 19525205

10

PathGen: a transitive gene pathway generator.

Clement K, Gustafson N, Berbert A, Carroll H, Merris C, Olsen A, Clement M, Snell Q, Allen J, Roper RJ. Clement K, et al. Bioinformatics. 2010 Feb 1;26(3):423-5. doi: 10.1093/bioinformatics/btp661. Epub 2009 Dec 4. Bioinformatics. 2010. PMID: 19965882

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