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Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.
Yang Z, Wafula EK, Honaas LA, Zhang H, Das M, Fernandez-Aparicio M, Huang K, Bandaranayake PC, Wu B, Der JP, Clarke CR, Ralph PE, Landherr L, Altman NS, Timko MP, Yoder JI, Westwood JH, dePamphilis CW. Yang Z, et al. Among authors: clarke cr. Mol Biol Evol. 2015 Mar;32(3):767-90. doi: 10.1093/molbev/msu343. Epub 2014 Dec 21. Mol Biol Evol. 2015. PMID: 25534030 Free PMC article.
Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.
Yang Z, Zhang Y, Wafula EK, Honaas LA, Ralph PE, Jones S, Clarke CR, Liu S, Su C, Zhang H, Altman NS, Schuster SC, Timko MP, Yoder JI, Westwood JH, dePamphilis CW. Yang Z, et al. Among authors: clarke cr. Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7010-E7019. doi: 10.1073/pnas.1608765113. Epub 2016 Oct 24. Proc Natl Acad Sci U S A. 2016. PMID: 27791104 Free PMC article.
Herbicide injury induces DNA methylome alterations in Arabidopsis.
Kim G, Clarke CR, Larose H, Tran HT, Haak DC, Zhang L, Askew S, Barney J, Westwood JH. Kim G, et al. Among authors: clarke cr. PeerJ. 2017 Jul 20;5:e3560. doi: 10.7717/peerj.3560. eCollection 2017. PeerJ. 2017. PMID: 28740750 Free PMC article.
Molecular Dialog Between Parasitic Plants and Their Hosts.
Clarke CR, Timko MP, Yoder JI, Axtell MJ, Westwood JH. Clarke CR, et al. Annu Rev Phytopathol. 2019 Aug 25;57:279-299. doi: 10.1146/annurev-phyto-082718-100043. Epub 2019 Jun 21. Annu Rev Phytopathol. 2019. PMID: 31226021 Review.
The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity.
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, Zaccardelli M, Setubal JC, Morales-Lizcano NP, Bernal A, Coaker G, Baker C, Bender CL, Leman S, Vinatzer BA. Cai R, et al. Among authors: clarke cr. PLoS Pathog. 2011 Aug;7(8):e1002130. doi: 10.1371/journal.ppat.1002130. Epub 2011 Aug 25. PLoS Pathog. 2011. PMID: 21901088 Free PMC article.
110 results