Clark TG - Search Results

1

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.

Phelan J, Deelder W, Ward D, Campino S, Hibberd ML, Clark TG. Phelan J, et al. Among authors: clark tg. BMC Bioinformatics. 2022 Apr 15;23(1):137. doi: 10.1186/s12859-022-04632-y. BMC Bioinformatics. 2022. PMID: 35428185 Free PMC article.

2

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations.

Campino S, Forton J, Raj S, Mohr B, Auburn S, Fry A, Mangano VD, Vandiedonck C, Richardson A, Rockett K, Clark TG, Kwiatkowski DP. Campino S, et al. Among authors: clark tg. PLoS One. 2008;3(12):e4105. doi: 10.1371/journal.pone.0004105. Epub 2008 Dec 31. PLoS One. 2008. PMID: 19116668 Free PMC article.

3

SnoopCGH: software for visualizing comparative genomic hybridization data.

Almagro-Garcia J, Manske M, Carret C, Campino S, Auburn S, Macinnis BL, Maslen G, Pain A, Newbold CI, Kwiatkowski DP, Clark TG. Almagro-Garcia J, et al. Among authors: clark tg. Bioinformatics. 2009 Oct 15;25(20):2732-3. doi: 10.1093/bioinformatics/btp488. Epub 2009 Aug 16. Bioinformatics. 2009. PMID: 19687029 Free PMC article.

4

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

Daelemans C, Ritchie ME, Smits G, Abu-Amero S, Sudbery IM, Forrest MS, Campino S, Clark TG, Stanier P, Kwiatkowski D, Deloukas P, Dermitzakis ET, Tavaré S, Moore GE, Dunham I. Daelemans C, et al. Among authors: clark tg. BMC Genet. 2010 Apr 19;11:25. doi: 10.1186/1471-2156-11-25. BMC Genet. 2010. PMID: 20403199 Free PMC article.

5

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.

Clark TG, Campino SG, Anastasi E, Auburn S, Teo YY, Small K, Rockett KA, Kwiatkowski DP, Holmes CC. Clark TG, et al. Bioinformatics. 2010 Aug 15;26(16):1999-2003. doi: 10.1093/bioinformatics/btq327. Epub 2010 Jun 16. Bioinformatics. 2010. PMID: 20554688 Free PMC article.

6

Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.

Auburn S, Campino S, Miotto O, Djimde AA, Zongo I, Manske M, Maslen G, Mangano V, Alcock D, MacInnis B, Rockett KA, Clark TG, Doumbo OK, Ouédraogo JB, Kwiatkowski DP. Auburn S, et al. Among authors: clark tg. PLoS One. 2012;7(2):e32891. doi: 10.1371/journal.pone.0032891. Epub 2012 Feb 29. PLoS One. 2012. PMID: 22393456 Free PMC article.

7

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing.

Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O'Brien J, Djimde A, Doumbo O, Zongo I, Ouedraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su XZ, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP. Manske M, et al. Among authors: clark tg. Nature. 2012 Jul 19;487(7407):375-9. doi: 10.1038/nature11174. Nature. 2012. PMID: 22722859 Free PMC article.

8

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.

Preston MD, Manske M, Horner N, Assefa S, Campino S, Auburn S, Zongo I, Ouedraogo JB, Nosten F, Anderson T, Clark TG. Preston MD, et al. Among authors: clark tg. Bioinformatics. 2012 Nov 15;28(22):2983-5. doi: 10.1093/bioinformatics/bts557. Epub 2012 Sep 13. Bioinformatics. 2012. PMID: 22976080 Free PMC article.

9

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences.

Coll F, Mallard K, Preston MD, Bentley S, Parkhill J, McNerney R, Martin N, Clark TG. Coll F, et al. Among authors: clark tg. Bioinformatics. 2012 Nov 15;28(22):2991-3. doi: 10.1093/bioinformatics/bts544. Epub 2012 Sep 26. Bioinformatics. 2012. PMID: 23014632 Free PMC article.

10

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.

Sepúlveda N, Campino SG, Assefa SA, Sutherland CJ, Pain A, Clark TG. Sepúlveda N, et al. Among authors: clark tg. BMC Genomics. 2013 Feb 26;14:128. doi: 10.1186/1471-2164-14-128. BMC Genomics. 2013. PMID: 23442253 Free PMC article.

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