Clark RL - Search Results

1

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics.

Baranwal M, Clark RL, Thompson J, Sun Z, Hero AO, Venturelli OS. Baranwal M, et al. Among authors: clark rl. Elife. 2022 Jun 23;11:e73870. doi: 10.7554/eLife.73870. Elife. 2022. PMID: 35736613 Free PMC article.

2

Microbial Interaction Network Inference in Microfluidic Droplets.

Hsu RH, Clark RL, Tan JW, Ahn JC, Gupta S, Romero PA, Venturelli OS. Hsu RH, et al. Among authors: clark rl. Cell Syst. 2019 Sep 25;9(3):229-242.e4. doi: 10.1016/j.cels.2019.06.008. Epub 2019 Sep 4. Cell Syst. 2019. PMID: 31494089 Free PMC article.

3

Design of synthetic human gut microbiome assembly and butyrate production.

Clark RL, Connors BM, Stevenson DM, Hromada SE, Hamilton JJ, Amador-Noguez D, Venturelli OS. Clark RL, et al. Nat Commun. 2021 May 31;12(1):3254. doi: 10.1038/s41467-021-22938-y. Nat Commun. 2021. PMID: 34059668 Free PMC article.

4

Negative interactions determine Clostridioides difficile growth in synthetic human gut communities.

Hromada S, Qian Y, Jacobson TB, Clark RL, Watson L, Safdar N, Amador-Noguez D, Venturelli OS. Hromada S, et al. Among authors: clark rl. Mol Syst Biol. 2021 Oct;17(10):e10355. doi: 10.15252/msb.202110355. Mol Syst Biol. 2021. PMID: 34693621 Free PMC article.

5

Under-Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle-Based Approach for Microscale Cell Culture.

Li C, Humayun M, Walker GM, Park KY, Connors B, Feng J, Pellitteri Hahn MC, Scarlett CO, Li J, Feng Y, Clark RL, Hefti H, Schrope J, Venturelli OS, Beebe DJ. Li C, et al. Among authors: clark rl. Adv Sci (Weinh). 2022 Apr;9(10):e2104510. doi: 10.1002/advs.202104510. Epub 2022 Feb 4. Adv Sci (Weinh). 2022. PMID: 35118834 Free PMC article.

6

Control points for design of taxonomic composition in synthetic human gut communities.

Connors BM, Thompson J, Ertmer S, Clark RL, Pfleger BF, Venturelli OS. Connors BM, et al. Among authors: clark rl. Cell Syst. 2023 Dec 20;14(12):1044-1058.e13. doi: 10.1016/j.cels.2023.11.007. Epub 2023 Dec 12. Cell Syst. 2023. PMID: 38091992 Free PMC article.

7

A roadmap for the synthesis of separation networks for the recovery of bio-based chemicals: Matching biological and process feasibility.

Yenkie KM, Wu W, Clark RL, Pfleger BF, Root TW, Maravelias CT. Yenkie KM, et al. Among authors: clark rl. Biotechnol Adv. 2016 Dec;34(8):1362-1383. doi: 10.1016/j.biotechadv.2016.10.003. Epub 2016 Oct 15. Biotechnol Adv. 2016. PMID: 27756578 Review.

8

A metabolic pathway for catabolizing levulinic acid in bacteria.

Rand JM, Pisithkul T, Clark RL, Thiede JM, Mehrer CR, Agnew DE, Campbell CE, Markley AL, Price MN, Ray J, Wetmore KM, Suh Y, Arkin AP, Deutschbauer AM, Amador-Noguez D, Pfleger BF. Rand JM, et al. Among authors: clark rl. Nat Microbiol. 2017 Dec;2(12):1624-1634. doi: 10.1038/s41564-017-0028-z. Epub 2017 Sep 25. Nat Microbiol. 2017. PMID: 28947739 Free PMC article.

9

High-CO₂ Requirement as a Mechanism for the Containment of Genetically Modified Cyanobacteria.

Clark RL, Gordon GC, Bennett NR, Lyu H, Root TW, Pfleger BF. Clark RL, et al. ACS Synth Biol. 2018 Feb 16;7(2):384-391. doi: 10.1021/acssynbio.7b00377. Epub 2018 Jan 12. ACS Synth Biol. 2018. PMID: 29320853 Free PMC article.

10

Engineering photosynthetic production of L-lysine.

Korosh TC, Markley AL, Clark RL, McGinley LL, McMahon KD, Pfleger BF. Korosh TC, et al. Among authors: clark rl. Metab Eng. 2017 Nov;44:273-283. doi: 10.1016/j.ymben.2017.10.010. Epub 2017 Oct 28. Metab Eng. 2017. PMID: 29111438 Free PMC article.

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