Clark EL - Search Results

1

From FAANG to fork: application of highly annotated genomes to improve farmed animal production.

Clark EL, Archibald AL, Daetwyler HD, Groenen MAM, Harrison PW, Houston RD, Kühn C, Lien S, Macqueen DJ, Reecy JM, Robledo D, Watson M, Tuggle CK, Giuffra E. Clark EL, et al. Genome Biol. 2020 Nov 24;21(1):285. doi: 10.1186/s13059-020-02197-8. Genome Biol. 2020. PMID: 33234160 Free PMC article. Review. No abstract available.

2

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA. Clark EL, et al. PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997. eCollection 2017 Sep. PLoS Genet. 2017. PMID: 28915238 Free PMC article.

3

Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression.

Bush SJ, McCulloch MEB, Muriuki C, Salavati M, Davis GM, Farquhar IL, Lisowski ZM, Archibald AL, Hume DA, Clark EL. Bush SJ, et al. Among authors: clark el. G3 (Bethesda). 2019 Feb 7;9(2):359-373. doi: 10.1534/g3.118.200810. G3 (Bethesda). 2019. PMID: 30530642 Free PMC article.

4

Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas.

Summers KM, Bush SJ, Wu C, Su AI, Muriuki C, Clark EL, Finlayson HA, Eory L, Waddell LA, Talbot R, Archibald AL, Hume DA. Summers KM, et al. Among authors: clark el. Front Genet. 2020 Feb 14;10:1355. doi: 10.3389/fgene.2019.01355. eCollection 2019. Front Genet. 2020. PMID: 32117413 Free PMC article.

5

Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle.

Dorji J, Vander Jagt CJ, Garner JB, Marett LC, Mason BA, Reich CM, Xiang R, Clark EL, Cocks BG, Chamberlain AJ, MacLeod IM, Daetwyler HD. Dorji J, et al. Among authors: clark el. BMC Genomics. 2020 Oct 19;21(1):720. doi: 10.1186/s12864-020-07018-7. BMC Genomics. 2020. PMID: 33076826 Free PMC article.

6

Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0).

Salavati M, Caulton A, Clark R, Gazova I, Smith TPL, Worley KC, Cockett NE, Archibald AL, Clarke SM, Murdoch BM, Clark EL. Salavati M, et al. Among authors: clark r, clark el. Front Genet. 2020 Oct 23;11:580580. doi: 10.3389/fgene.2020.580580. eCollection 2020. Front Genet. 2020. PMID: 33193703 Free PMC article.

7

Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations.

Wiener P, Robert C, Ahbara A, Salavati M, Abebe A, Kebede A, Wragg D, Friedrich J, Vasoya D, Hume DA, Djikeng A, Watson M, Prendergast JGD, Hanotte O, Mwacharo JM, Clark EL. Wiener P, et al. Among authors: clark el. Genome Biol Evol. 2021 Mar 1;13(3):evab014. doi: 10.1093/gbe/evab014. Genome Biol Evol. 2021. PMID: 33501931 Free PMC article.

8

Profiling of open chromatin in developing pig (Sus scrofa) muscle to identify regulatory regions.

Salavati M, Woolley SA, Cortés Araya Y, Halstead MM, Stenhouse C, Johnsson M, Ashworth CJ, Archibald AL, Donadeu FX, Hassan MA, Clark EL. Salavati M, et al. Among authors: clark el. G3 (Bethesda). 2022 Feb 4;12(2):jkab424. doi: 10.1093/g3journal/jkab424. G3 (Bethesda). 2022. PMID: 34897420 Free PMC article.

9

Correction to: Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle.

Dorji J, Vander Jagt CJ, Garner JB, Marett LC, Mason BA, Reich CM, Xiang R, Clark EL, Cocks BG, Chamberlain AJ, MacLeod IM, Daetwyler HD. Dorji J, et al. Among authors: clark el. BMC Genomics. 2022 Apr 20;23(1):315. doi: 10.1186/s12864-022-08404-z. BMC Genomics. 2022. PMID: 35443605 Free PMC article. No abstract available.

10

Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expression sequencing.

Salavati M, Clark R, Becker D, Kühn C, Plastow G, Dupont S, Moreira GCM, Charlier C, Clark EL. Salavati M, et al. Among authors: clark r, clark el. G3 (Bethesda). 2023 Aug 9;13(8):jkad108. doi: 10.1093/g3journal/jkad108. G3 (Bethesda). 2023. PMID: 37216666 Free PMC article.

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