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A foundation for reliable spatial proteomics data analysis.
Gatto L, Breckels LM, Burger T, Nightingale DJ, Groen AJ, Campbell C, Nikolovski N, Mulvey CM, Christoforou A, Ferro M, Lilley KS. Gatto L, et al. Among authors: christoforou a. Mol Cell Proteomics. 2014 Aug;13(8):1937-52. doi: 10.1074/mcp.M113.036350. Epub 2014 May 20. Mol Cell Proteomics. 2014. PMID: 24846987 Free PMC article.
A draft map of the mouse pluripotent stem cell spatial proteome.
Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Martinez Arias A, Lilley KS. Christoforou A, et al. Nat Commun. 2016 Jan 12;7:8992. doi: 10.1038/ncomms9992. Nat Commun. 2016. PMID: 26754106 Free PMC article.
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics.
Breckels LM, Holden SB, Wojnar D, Mulvey CM, Christoforou A, Groen A, Trotter MW, Kohlbacher O, Lilley KS, Gatto L. Breckels LM, et al. Among authors: christoforou a. PLoS Comput Biol. 2016 May 13;12(5):e1004920. doi: 10.1371/journal.pcbi.1004920. eCollection 2016 May. PLoS Comput Biol. 2016. PMID: 27175778 Free PMC article.
Using hyperLOPIT to perform high-resolution mapping of the spatial proteome.
Mulvey CM, Breckels LM, Geladaki A, Britovšek NK, Nightingale DJH, Christoforou A, Elzek M, Deery MJ, Gatto L, Lilley KS. Mulvey CM, et al. Among authors: christoforou a. Nat Protoc. 2017 Jun;12(6):1110-1135. doi: 10.1038/nprot.2017.026. Epub 2017 May 4. Nat Protoc. 2017. PMID: 28471460
Using R and Bioconductor for proteomics data analysis.
Gatto L, Christoforou A. Gatto L, et al. Among authors: christoforou a. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):42-51. doi: 10.1016/j.bbapap.2013.04.032. Epub 2013 May 18. Biochim Biophys Acta. 2014. PMID: 23692960 Review.
Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry.
Koutroukides TA, Jaros JA, Amess B, Martins-de-Souza D, Guest PC, Rahmoune H, Levin Y, Deery M, Charles PD, Hester S, Groen A, Christoforou A, Howard J, Bond N, Bahn S, Lilley KS. Koutroukides TA, et al. Among authors: christoforou a. Methods Mol Biol. 2013;1061:291-307. doi: 10.1007/978-1-62703-589-7_18. Methods Mol Biol. 2013. PMID: 23963945
108 results