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Pan-cancer proteogenomics characterization of tumor immunity.
Cell. 2024 Feb 29;187(5):1255-1277.e27. doi: 10.1016/j.cell.2024.01.027. Epub 2024 Feb 14.
Cell. 2024.
PMID: 38359819
Free PMC article.
Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds.
Dele-Oni DO, Christianson KE, Egri SB, Vaca Jacome AS, DeRuff KC, Mullahoo J, Sharma V, Davison D, Ko T, Bula M, Blanchard J, Young JZ, Litichevskiy L, Lu X, Lam D, Asiedu JK, Toder C, Officer A, Peckner R, MacCoss MJ, Tsai LH, Carr SA, Papanastasiou M, Jaffe JD.
Dele-Oni DO, et al. Among authors: christianson ke.
Sci Data. 2021 Aug 25;8(1):226. doi: 10.1038/s41597-021-01008-4.
Sci Data. 2021.
PMID: 34433823
Free PMC article.
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A proteogenomic portrait of lung squamous cell carcinoma.
Satpathy S, Krug K, Jean Beltran PM, Savage SR, Petralia F, Kumar-Sinha C, Dou Y, Reva B, Kane MH, Avanessian SC, Vasaikar SV, Krek A, Lei JT, Jaehnig EJ, Omelchenko T, Geffen Y, Bergstrom EJ, Stathias V, Christianson KE, Heiman DI, Cieslik MP, Cao S, Song X, Ji J, Liu W, Li K, Wen B, Li Y, Gümüş ZH, Selvan ME, Soundararajan R, Visal TH, Raso MG, Parra ER, Babur Ö, Vats P, Anand S, Schraink T, Cornwell M, Rodrigues FM, Zhu H, Mo CK, Zhang Y, da Veiga Leprevost F, Huang C, Chinnaiyan AM, Wyczalkowski MA, Omenn GS, Newton CJ, Schurer S, Ruggles KV, Fenyö D, Jewell SD, Thiagarajan M, Mesri M, Rodriguez H, Mani SA, Udeshi ND, Getz G, Suh J, Li QK, Hostetter G, Paik PK, Dhanasekaran SM, Govindan R, Ding L, Robles AI, Clauser KR, Nesvizhskii AI, Wang P, Carr SA, Zhang B, Mani DR, Gillette MA; Clinical Proteomic Tumor Analysis Consortium.
Satpathy S, et al. Among authors: christianson ke.
Cell. 2021 Aug 5;184(16):4348-4371.e40. doi: 10.1016/j.cell.2021.07.016.
Cell. 2021.
PMID: 34358469
Free PMC article.
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Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.
Babur Ö, Luna A, Korkut A, Durupinar F, Siper MC, Dogrusoz U, Vaca Jacome AS, Peckner R, Christianson KE, Jaffe JD, Spellman PT, Aslan JE, Sander C, Demir E.
Babur Ö, et al. Among authors: christianson ke.
Patterns (N Y). 2021 May 12;2(6):100257. doi: 10.1016/j.patter.2021.100257. eCollection 2021 Jun 11.
Patterns (N Y). 2021.
PMID: 34179843
Free PMC article.
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PANOPLY: a cloud-based platform for automated and reproducible proteogenomic data analysis.
Mani DR, Maynard M, Kothadia R, Krug K, Christianson KE, Heiman D, Clauser KR, Birger C, Getz G, Carr SA.
Mani DR, et al. Among authors: christianson ke.
Nat Methods. 2021 Jun;18(6):580-582. doi: 10.1038/s41592-021-01176-6.
Nat Methods. 2021.
PMID: 34040252
Free PMC article.
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Avant-garde: an automated data-driven DIA data curation tool.
Vaca Jacome AS, Peckner R, Shulman N, Krug K, DeRuff KC, Officer A, Christianson KE, MacLean B, MacCoss MJ, Carr SA, Jaffe JD.
Vaca Jacome AS, et al. Among authors: christianson ke.
Nat Methods. 2020 Dec;17(12):1237-1244. doi: 10.1038/s41592-020-00986-4. Epub 2020 Nov 16.
Nat Methods. 2020.
PMID: 33199889
Free PMC article.
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Biochemical and structural characterization of HDAC8 mutants associated with Cornelia de Lange syndrome spectrum disorders.
Decroos C, Christianson NH, Gullett LE, Bowman CM, Christianson KE, Deardorff MA, Christianson DW.
Decroos C, et al. Among authors: christianson ke.
Biochemistry. 2015 Oct 27;54(42):6501-13. doi: 10.1021/acs.biochem.5b00881. Epub 2015 Oct 14.
Biochemistry. 2015.
PMID: 26463496
Free PMC article.
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Compromised structure and function of HDAC8 mutants identified in Cornelia de Lange Syndrome spectrum disorders.
Decroos C, Bowman CM, Moser JA, Christianson KE, Deardorff MA, Christianson DW.
Decroos C, et al. Among authors: christianson ke.
ACS Chem Biol. 2014 Sep 19;9(9):2157-64. doi: 10.1021/cb5003762. Epub 2014 Jul 30.
ACS Chem Biol. 2014.
PMID: 25075551
Free PMC article.
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