Choi J - Search Results

1

A meta-analysis of global fungal distribution reveals climate-driven patterns.

Větrovský T, Kohout P, Kopecký M, Machac A, Man M, Bahnmann BD, Brabcová V, Choi J, Meszárošová L, Human ZR, Lepinay C, Lladó S, López-Mondéjar R, Martinović T, Mašínová T, Morais D, Navrátilová D, Odriozola I, Štursová M, Švec K, Tláskal V, Urbanová M, Wan J, Žifčáková L, Howe A, Ladau J, Peay KG, Storch D, Wild J, Baldrian P. Větrovský T, et al. Among authors: choi j. Nat Commun. 2019 Nov 13;10(1):5142. doi: 10.1038/s41467-019-13164-8. Nat Commun. 2019. PMID: 31723140 Free PMC article.

2

RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids.

Dunivin TK, Choi J, Howe A, Shade A. Dunivin TK, et al. Among authors: choi j. mSystems. 2019 Feb 26;4(1):e00349-18. doi: 10.1128/mSystems.00349-18. eCollection 2019 Jan-Feb. mSystems. 2019. PMID: 30834332 Free PMC article.

3

Diversity of Antibiotic Resistance genes and Transfer Elements-Quantitative Monitoring (DARTE-QM): a method for detection of antimicrobial resistance in environmental samples.

Smith SD, Choi J, Ricker N, Yang F, Hinsa-Leasure S, Soupir ML, Allen HK, Howe A. Smith SD, et al. Among authors: choi j. Commun Biol. 2022 Mar 17;5(1):216. doi: 10.1038/s42003-022-03155-9. Commun Biol. 2022. PMID: 35301418 Free PMC article.

4

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application.

Lopatto E, Choi J, Colina A, Ma L, Howe A, Hinsa-Leasure S. Lopatto E, et al. Among authors: choi j. PLoS One. 2019 Aug 19;14(8):e0220770. doi: 10.1371/journal.pone.0220770. eCollection 2019. PLoS One. 2019. PMID: 31425534 Free PMC article.

5

Identification of Soil Microbes Capable of Utilizing Cellobiosan.

Lian J, Choi J, Tan YS, Howe A, Wen Z, Jarboe LR. Lian J, et al. Among authors: choi j. PLoS One. 2016 Feb 12;11(2):e0149336. doi: 10.1371/journal.pone.0149336. eCollection 2016. PLoS One. 2016. PMID: 26872347 Free PMC article.

6

Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop.

Shade A, Dunivin TK, Choi J, Teal TK, Howe AC. Shade A, et al. Among authors: choi j. mSystems. 2019 Aug 20;4(4):e00297-19. doi: 10.1128/mSystems.00297-19. mSystems. 2019. PMID: 31431509 Free PMC article.

7

Response of Total (DNA) and Metabolically Active (RNA) Microbial Communities in Miscanthus × Giganteus Cultivated Soil to Different Nitrogen Fertilization Rates.

Yang J, Lee J, Choi J, Ma L, Heaton EA, Howe A. Yang J, et al. Among authors: choi j. Microbiol Spectr. 2022 Feb 23;10(1):e0211621. doi: 10.1128/spectrum.02116-21. Epub 2022 Feb 16. Microbiol Spectr. 2022. PMID: 35170997 Free PMC article.

8

Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance.

Choi J, Rieke EL, Moorman TB, Soupir ML, Allen HK, Smith SD, Howe A. Choi J, et al. FEMS Microbiol Ecol. 2018 Apr 1;94(4):fiy006. doi: 10.1093/femsec/fiy006. FEMS Microbiol Ecol. 2018. PMID: 29346541 Free PMC article.

9

Improved detection of mcyA genes and their phylogenetic origins in harmful algal blooms.

Lee J, Choi J, Fatka M, Swanner E, Ikuma K, Liang X, Leung T, Howe A. Lee J, et al. Among authors: choi j. Water Res. 2020 Jun 1;176:115730. doi: 10.1016/j.watres.2020.115730. Epub 2020 Mar 19. Water Res. 2020. PMID: 32234603

10

Strategies to improve reference databases for soil microbiomes.

Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A. Choi J, et al. ISME J. 2017 Apr;11(4):829-834. doi: 10.1038/ismej.2016.168. Epub 2016 Dec 9. ISME J. 2017. PMID: 27935589 Free PMC article. No abstract available.

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