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Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.
Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ. Edger PP, et al. Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124. Gigascience. 2018. PMID: 29253147 Free PMC article.
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.
Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Song GQ, Childs KL, Schilmiller A, Vorsa N, Buell CR, VanBuren R, Jiang N, Edger PP. Colle M, et al. Among authors: childs kl. Gigascience. 2019 Mar 1;8(3):giz012. doi: 10.1093/gigascience/giz012. Gigascience. 2019. PMID: 30715294 Free PMC article.
Origin and evolution of the octoploid strawberry genome.
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ. Edger PP, et al. Among authors: childs kl. Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Nat Genet. 2019. PMID: 30804557 Free PMC article.
Author Correction: Origin and evolution of the octoploid strawberry genome.
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ. Edger PP, et al. Among authors: childs kl. Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4. Nat Genet. 2019. PMID: 30842601 Free PMC article.
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).
McGrath JM, Funk A, Galewski P, Ou S, Townsend B, Davenport K, Daligault H, Johnson S, Lee J, Hastie A, Darracq A, Willems G, Barnes S, Liachko I, Sullivan S, Koren S, Phillippy A, Wang J, Liu T, Pulman J, Childs K, Shu S, Yocum A, Fermin D, Mutasa-Göttgens E, Stevanato P, Taguchi K, Naegele R, Dorn KM. McGrath JM, et al. Among authors: childs k. DNA Res. 2023 Feb 1;30(1):dsac033. doi: 10.1093/dnares/dsac033. DNA Res. 2023. PMID: 36208288 Free PMC article.
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.
Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR. Edger PP, et al. Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16. Plant Cell. 2017. PMID: 28814644 Free PMC article.
210 results