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Page 1
Comprehensive proteogenomic characterization of rare kidney tumors.
Li GX, Chen L, Hsiao Y, Mannan R, Zhang Y, Luo J, Petralia F, Cho H, Hosseini N, Leprevost FDV, Calinawan A, Li Y, Anand S, Dagar A, Geffen Y, Kumar-Sinha C, Chugh S, Le A, Ponce S, Guo S, Zhang C, Schnaubelt M, Al Deen NN, Chen F, Caravan W, Houston A, Hopkins A, Newton CJ, Wang X, Polasky DA, Haynes S, Yu F, Jing X, Chen S, Robles AI, Mesri M, Thiagarajan M, An E, Getz GA, Linehan WM, Hostetter G, Jewell SD, Chan DW, Wang P, Omenn GS, Mehra R, Ricketts CJ, Ding L, Chinnaiyan AM, Cieslik MP, Dhanasekaran SM, Zhang H, Nesvizhskii AI; Clinical Proteomic Tumor Analysis Consortium. Li GX, et al. Cell Rep Med. 2024 Apr 26:101547. doi: 10.1016/j.xcrm.2024.101547. Online ahead of print. Cell Rep Med. 2024. PMID: 38703764 Free article.
Comparison of Prompt Engineering and Fine-Tuning Strategies in Large Language Models in the Classification of Clinical Notes.
Zhang X, Talukdar N, Vemulapalli S, Ahn S, Wang J, Meng H, Murtaza SMB, Leshchiner D, Dave AA, Joseph DF, Witteveen-Lane M, Chesla D, Zhou J, Chen B. Zhang X, et al. Among authors: chesla d. medRxiv [Preprint]. 2024 Feb 8:2024.02.07.24302444. doi: 10.1101/2024.02.07.24302444. medRxiv. 2024. PMID: 38370673 Free PMC article. Preprint.
Influenza vaccine effectiveness against hospitalized SARS-CoV-2 infection.
Lee YC, Liu L, Yuan L, Risk M, Heinrich K, Witteveen-Lane M, Hayek S, Malosh R, Pop-Busui R, Jiang B, Shen C, Chesla D, Kennedy R, Xu S, Sims M, Homayouni R, Zhao L. Lee YC, et al. Among authors: chesla d. medRxiv [Preprint]. 2023 Oct 31:2023.10.27.23297682. doi: 10.1101/2023.10.27.23297682. medRxiv. 2023. PMID: 37961376 Free PMC article. Preprint.
Differential Transcriptomic Signatures of Small Airway Cell Cultures Derived from IPF and COVID-19-Induced Exacerbation of Interstitial Lung Disease.
Uhl K, Paithankar S, Leshchiner D, Jager TE, Abdelgied M, Dixit B, Marashdeh R, Luo-Li D, Tripp K, Peraino AM, Tamae Kakazu M, Lawson C, Chesla DW, Luo-Li N, Murphy ET, Prokop J, Chen B, Girgis RE, Li X. Uhl K, et al. Among authors: chesla dw. Cells. 2023 Oct 21;12(20):2501. doi: 10.3390/cells12202501. Cells. 2023. PMID: 37887346 Free PMC article.
Examining sociodemographic correlates of opioid use, misuse, and use disorders in the All of Us Research Program.
Yeh HH, Peltz-Rauchman C, Johnson CC, Pawloski PA, Chesla D, Waring SC, Stevens AB, Epstein M, Joseph C, Miller-Matero LR, Gui H, Tang A, Boerwinkle E, Cicek M, Clark CR, Cohn E, Gebo K, Loperena R, Mayo K, Mockrin S, Ohno-Machado L, Schully S, Ramirez AH, Qian J, Ahmedani BK. Yeh HH, et al. Among authors: chesla d. PLoS One. 2023 Aug 18;18(8):e0290416. doi: 10.1371/journal.pone.0290416. eCollection 2023. PLoS One. 2023. PMID: 37594966 Free PMC article.
Proteogenomic insights suggest druggable pathways in endometrial carcinoma.
Dou Y, Katsnelson L, Gritsenko MA, Hu Y, Reva B, Hong R, Wang YT, Kolodziejczak I, Lu RJ, Tsai CF, Bu W, Liu W, Guo X, An E, Arend RC, Bavarva J, Chen L, Chu RK, Czekański A, Davoli T, Demicco EG, DeLair D, Devereaux K, Dhanasekaran SM, Dottino P, Dover B, Fillmore TL, Foxall M, Hermann CE, Hiltke T, Hostetter G, Jędryka M, Jewell SD, Johnson I, Kahn AG, Ku AT, Kumar-Sinha C, Kurzawa P, Lazar AJ, Lazcano R, Lei JT, Li Y, Liao Y, Lih TM, Lin TT, Martignetti JA, Masand RP, Matkowski R, McKerrow W, Mesri M, Monroe ME, Moon J, Moore RJ, Nestor MD, Newton C, Omelchenko T, Omenn GS, Payne SH, Petyuk VA, Robles AI, Rodriguez H, Ruggles KV, Rykunov D, Savage SR, Schepmoes AA, Shi T, Shi Z, Tan J, Taylor M, Thiagarajan M, Wang JM, Weitz KK, Wen B, Williams CM, Wu Y, Wyczalkowski MA, Yi X, Zhang X, Zhao R, Mutch D, Chinnaiyan AM, Smith RD, Nesvizhskii AI, Wang P, Wiznerowicz M, Ding L, Mani DR, Zhang H, Anderson ML, Rodland KD, Zhang B, Liu T, Fenyö D; Clinical Proteomic Tumor Analysis Consortium. Dou Y, et al. Cancer Cell. 2023 Sep 11;41(9):1586-1605.e15. doi: 10.1016/j.ccell.2023.07.007. Epub 2023 Aug 10. Cancer Cell. 2023. PMID: 37567170 Free article.
Targeting ATP12A, a Nongastric Proton Pump α Subunit, for Idiopathic Pulmonary Fibrosis Treatment.
Abdelgied M, Uhl K, Chen OG, Schultz C, Tripp K, Peraino AM, Paithankar S, Chen B, Tamae Kakazu M, Castillo Bahena A, Jager TE, Lawson C, Chesla DW, Pestov N, Modyanov NN, Prokop J, Neubig RR, Uhal BD, Girgis RE, Li X. Abdelgied M, et al. Among authors: chesla dw. Am J Respir Cell Mol Biol. 2023 Jun;68(6):638-650. doi: 10.1165/rcmb.2022-0264OC. Am J Respir Cell Mol Biol. 2023. PMID: 36780662 Free PMC article.
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness.
Li Y, Lih TM, Dhanasekaran SM, Mannan R, Chen L, Cieslik M, Wu Y, Lu RJ, Clark DJ, Kołodziejczak I, Hong R, Chen S, Zhao Y, Chugh S, Caravan W, Naser Al Deen N, Hosseini N, Newton CJ, Krug K, Xu Y, Cho KC, Hu Y, Zhang Y, Kumar-Sinha C, Ma W, Calinawan A, Wyczalkowski MA, Wendl MC, Wang Y, Guo S, Zhang C, Le A, Dagar A, Hopkins A, Cho H, Leprevost FDV, Jing X, Teo GC, Liu W, Reimers MA, Pachynski R, Lazar AJ, Chinnaiyan AM, Van Tine BA, Zhang B, Rodland KD, Getz G, Mani DR, Wang P, Chen F, Hostetter G, Thiagarajan M, Linehan WM, Fenyö D, Jewell SD, Omenn GS, Mehra R, Wiznerowicz M, Robles AI, Mesri M, Hiltke T, An E, Rodriguez H, Chan DW, Ricketts CJ, Nesvizhskii AI, Zhang H, Ding L; Clinical Proteomic Tumor Analysis Consortium. Li Y, et al. Cancer Cell. 2023 Jan 9;41(1):139-163.e17. doi: 10.1016/j.ccell.2022.12.001. Epub 2022 Dec 22. Cancer Cell. 2023. PMID: 36563681 Free PMC article.
BGLM: big data-guided LOINC mapping with multi-language support.
Liu K, Witteveen-Lane M, Glicksberg BS, Kulkarni O, Shankar R, Chekalin E, Paithankar S, Yang J, Chesla D, Chen B. Liu K, et al. Among authors: chesla d. JAMIA Open. 2022 Nov 25;5(4):ooac099. doi: 10.1093/jamiaopen/ooac099. eCollection 2022 Dec. JAMIA Open. 2022. PMID: 36448022 Free PMC article.
62 results